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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2631 and Psest_2632 are separated by 144 nucleotides
Psest_2632 and Psest_2633 are separated by 115 nucleotides
Psest_2633 and Psest_2634 are separated by 14 nucleotides
Psest_2634 and Psest_2635 are separated by 93 nucleotides
Psest_2631: Psest_2631 - AraC-type DNA-binding domain-containing proteins, at 2,811,644 to 2,812,516
_2631
Psest_2632: Psest_2632 - ribosomal protein S12 methylthiotransferase RimO, at 2,812,661 to 2,813,983
_2632
Psest_2633: Psest_2633 - choline dehydrogenase, at 2,814,099 to 2,815,772
_2633
Psest_2634: Psest_2634 - glycine betaine aldehyde dehydrogenase, at 2,815,787 to 2,817,259
_2634
Psest_2635: Psest_2635 - choline/carnitine/betaine transport, at 2,817,353 to 2,819,419
_2635
Group
Condition
Psest
_2631
Psest
_2632
Psest
_2633
Psest
_2634
Psest
_2635
stress
Choline chloride 90 mM
-0.4
+0.4
-2.0
-3.3
+1.0
stress
Choline chloride 90 mM
+0.0
+0.3
-1.8
-3.1
+0.8
nitrogen source
L-Alanine (N)
-0.5
-0.9
-0.8
-0.9
-0.2
stress
Choline Lysine 20 mM
-0.5
-0.3
-1.2
-2.3
+1.0
nitrogen source
nitrite (N)
-0.8
-0.5
-0.9
-0.4
-0.5
stress
Choline Lysine 20 mM
-0.2
-0.0
-1.3
-2.2
+1.0
stress
Def Carbenicillin 0.008 mg/ml
-1.4
-0.4
-0.3
+0.1
-0.5
nitrogen source
nitrate (N)
-0.7
-0.8
-0.5
+0.0
-0.5
stress
5-Hydroxymethylfurfural 5 mM
-0.7
-0.6
-0.2
-0.6
-0.2
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.8
-0.7
-0.5
+0.2
-0.5
RCH2 grown on a colony of N2F3
-0.2
-0.7
+0.1
-1.8
+0.5
nitrogen source
L-Isoleucine (N)
-0.7
-0.2
-0.5
-0.6
-0.1
stress
Cephalothin 0.04 mg/ml
-0.8
-0.2
-0.2
-0.7
-0.2
stress
Def Doxycycline hyclate 0.0002 mg/ml
-0.1
-0.8
-0.3
-0.7
-0.1
stress
Def A22 0.015 mg/ml
-0.3
-0.9
-0.6
-0.1
-0.2
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.9
-0.2
-0.2
-0.4
-0.2
nitrogen source
Cytosine (N)
-0.2
-0.5
-0.5
-0.4
-0.2
stress
Def Vancomycin 0.008 mg/ml
-0.1
-1.0
-0.2
-0.4
-0.1
stress
Def Benzethonium chloride 0.008 mM
-0.7
-0.8
+0.1
+0.4
-0.1
stress
Def Carbenicillin 0.02 mg/ml
-0.5
-1.6
+0.4
+0.5
+0.0
stress
benzoic 0.4 mg/ml
-0.5
-0.7
-0.1
+0.6
+0.0
stress
methylglyoxal 0.0016 vol%
+0.1
+0.2
+0.2
-1.2
+0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.0
-0.6
+0.3
-0.6
+0.4
stress
D-Cycloserine 0.032 mg/ml
-0.6
+0.6
+0.1
-0.5
+0.0
RCH2 grown on a colony of N2F3
-0.4
+1.1
-0.3
-0.7
+0.0
RCH2 grown on a colony of N2C3
-0.2
+0.4
+0.3
-0.6
+0.1
stress
Lactate-nitrate; anaerobic sample2
-0.1
+0.5
-0.5
+0.6
+0.1
stress
Lactate-nitrate; anaerobic; copper stress sample2
-0.0
+0.6
-0.6
+0.6
+0.2
RCH2 grown on a colony of ecoli
+0.5
-0.3
+0.2
+0.7
-0.0
stress
Vanillin 2 mM
-0.1
+1.2
+0.3
+0.3
-0.1
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