Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2631 and Psest_2632 are separated by 144 nucleotidesPsest_2632 and Psest_2633 are separated by 115 nucleotidesPsest_2633 and Psest_2634 are separated by 14 nucleotidesPsest_2634 and Psest_2635 are separated by 93 nucleotides Psest_2631: Psest_2631 - AraC-type DNA-binding domain-containing proteins, at 2,811,644 to 2,812,516 _2631 Psest_2632: Psest_2632 - ribosomal protein S12 methylthiotransferase RimO, at 2,812,661 to 2,813,983 _2632 Psest_2633: Psest_2633 - choline dehydrogenase, at 2,814,099 to 2,815,772 _2633 Psest_2634: Psest_2634 - glycine betaine aldehyde dehydrogenase, at 2,815,787 to 2,817,259 _2634 Psest_2635: Psest_2635 - choline/carnitine/betaine transport, at 2,817,353 to 2,819,419 _2635
Group Condition Psest_2631 Psest_2632 Psest_2633 Psest_2634 Psest_2635
stress Choline chloride 90 mM -0.4 +0.4 -2.0 -3.3 +1.0
stress Choline chloride 90 mM +0.0 +0.3 -1.8 -3.1 +0.8
nitrogen source L-Alanine (N) -0.5 -0.9 -0.8 -0.9 -0.2
stress Choline Lysine 20 mM -0.5 -0.3 -1.2 -2.3 +1.0
nitrogen source nitrite (N) -0.8 -0.5 -0.9 -0.4 -0.5
stress Choline Lysine 20 mM -0.2 -0.0 -1.3 -2.2 +1.0
stress Def Carbenicillin 0.008 mg/ml -1.4 -0.4 -0.3 +0.1 -0.5
nitrogen source nitrate (N) -0.7 -0.8 -0.5 +0.0 -0.5
stress 5-Hydroxymethylfurfural 5 mM -0.7 -0.6 -0.2 -0.6 -0.2
stress Def Benzalkonium Chloride 0.002 mg/ml -0.8 -0.7 -0.5 +0.2 -0.5
RCH2 grown on a colony of N2F3 -0.2 -0.7 +0.1 -1.8 +0.5
nitrogen source L-Isoleucine (N) -0.7 -0.2 -0.5 -0.6 -0.1
stress Cephalothin 0.04 mg/ml -0.8 -0.2 -0.2 -0.7 -0.2
stress Def Doxycycline hyclate 0.0002 mg/ml -0.1 -0.8 -0.3 -0.7 -0.1
stress Def A22 0.015 mg/ml -0.3 -0.9 -0.6 -0.1 -0.2
stress Def 2-Furfuraldehyde 0.032 vol% -0.9 -0.2 -0.2 -0.4 -0.2
nitrogen source Cytosine (N) -0.2 -0.5 -0.5 -0.4 -0.2
stress Def Vancomycin 0.008 mg/ml -0.1 -1.0 -0.2 -0.4 -0.1
stress Def Benzethonium chloride 0.008 mM -0.7 -0.8 +0.1 +0.4 -0.1
stress Def Carbenicillin 0.02 mg/ml -0.5 -1.6 +0.4 +0.5 +0.0
stress benzoic 0.4 mg/ml -0.5 -0.7 -0.1 +0.6 +0.0
stress methylglyoxal 0.0016 vol% +0.1 +0.2 +0.2 -1.2 +0.1
stress Polymyxin B sulfate 0.0001 mg/ml +0.0 -0.6 +0.3 -0.6 +0.4
stress D-Cycloserine 0.032 mg/ml -0.6 +0.6 +0.1 -0.5 +0.0
RCH2 grown on a colony of N2F3 -0.4 +1.1 -0.3 -0.7 +0.0
RCH2 grown on a colony of N2C3 -0.2 +0.4 +0.3 -0.6 +0.1
stress Lactate-nitrate; anaerobic sample2 -0.1 +0.5 -0.5 +0.6 +0.1
stress Lactate-nitrate; anaerobic; copper stress sample2 -0.0 +0.6 -0.6 +0.6 +0.2
RCH2 grown on a colony of ecoli +0.5 -0.3 +0.2 +0.7 -0.0
stress Vanillin 2 mM -0.1 +1.2 +0.3 +0.3 -0.1
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