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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2624 and Psest_2625 are separated by 15 nucleotides
Psest_2625 and Psest_2626 are separated by 54 nucleotides
Psest_2626 and Psest_2627 are separated by 12 nucleotides
Psest_2627 and Psest_2628 are separated by 12 nucleotides
Psest_2624: Psest_2624 - hypothetical protein, at 2,806,581 to 2,806,850
_2624
Psest_2625: Psest_2625 - Flp pilus assembly protein, secretin CpaC, at 2,806,866 to 2,808,380
_2625
Psest_2626: Psest_2626 - Flp pilus assembly protein CpaB, at 2,808,435 to 2,809,244
_2626
Psest_2627: Psest_2627 - hypothetical protein, at 2,809,257 to 2,810,576
_2627
Psest_2628: Psest_2628 - Flp pilus assembly protein, protease CpaA, at 2,810,589 to 2,811,095
_2628
Group
Condition
Psest
_2624
Psest
_2625
Psest
_2626
Psest
_2627
Psest
_2628
stress
5-Hydroxymethylfurfural 5 mM
-0.4
-0.5
-0.6
-0.2
-0.7
RCH2 grown on a colony of 8R2A
-0.3
-0.2
-2.0
+0.0
+0.0
nitrogen source
nitrite (N)
-0.9
-0.4
+0.5
-0.7
-0.8
carbon source
D-Gluconic Acid (C)
-1.3
+0.1
-0.5
-0.4
+0.1
stress
Nalidixic 0.00390625 mg/ml
+0.4
-0.5
-1.0
+0.1
-1.1
RCH2 grown on a colony of N2F3
+0.2
-0.3
-1.0
-0.3
-0.6
stress
Paraquat dichloride 0.015 mg/ml
-0.8
+0.1
+0.3
-0.7
-0.7
stress
Paraquat dichloride 0.015 mg/ml
-1.5
-0.3
+0.7
-0.5
-0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.7
-0.6
+0.4
-0.7
+0.3
stress
nitrate 250 mM
-3.3
+0.1
+0.9
-0.1
+1.1
RCH2 grown on a colony of ecoli
-0.2
+0.2
-1.1
+0.5
-0.5
RCH2 grown on a colony of N2F3
-1.2
-0.2
+0.8
+0.4
-1.0
vitamin
No vitamins t2
-0.9
-0.1
+0.6
+0.1
-0.8
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.6
-0.4
+0.8
-0.4
-0.1
carbon source
propionate (C)
-0.2
+0.1
-0.5
+0.8
-0.7
stress
Lactate-nitrate; anaerobic; nickel stress sample2
+1.2
-0.1
-0.8
-0.0
-0.6
stress
Spectinomycin 0.00625 mg/ml
-0.4
-0.3
-0.4
-0.2
+1.4
stress
Benzalkonium Chloride 0.002 mg/ml
-1.0
-0.0
+0.7
-0.1
+0.7
stress
Lactate-nitrate; anaerobic; dichromate stress sample1
+0.5
-0.1
-1.0
+0.5
+0.7
RCH2 grown on a colony of Serratia
+1.5
-0.4
-0.8
+0.0
+0.8
stress
Gentamicin 0.0016 mg/ml
-0.7
+0.1
+0.7
-0.1
+1.2
carbon source
L-tyrosine (C)
-0.2
+0.4
+1.1
+0.5
-0.6
stress
Fusidic 0.016 mg/ml
-0.2
+0.1
+1.3
-0.5
+0.5
RCH2 grown on a colony of Serratia
+0.9
-0.2
-0.4
+0.2
+1.1
metal limitation
Lactate-nitrite with YE; anaerobic; sample3
+0.6
+0.2
-0.5
+0.2
+1.1
stress
Chlorate 75 mM
+0.1
+0.3
+0.8
-0.5
+1.3
temperature
LB 30C timecourse1 timepoint 3
+1.0
+0.4
+0.1
-0.4
+1.0
stress
Def Nalidixic 0.001 mg/ml
+0.6
+0.3
+0.4
+0.4
+0.8
stress
Def Thallium(I) acetate 0.125 mg/ml
+0.9
+0.3
+0.1
+0.4
+0.8
nitrogen source
L-Isoleucine (N)
+0.5
+0.5
+1.1
+0.1
+0.9
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