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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2619 and Psest_2620 overlap by 11 nucleotides
Psest_2620 and Psest_2621 overlap by 7 nucleotides
Psest_2621 and Psest_2622 overlap by 1 nucleotides
Psest_2622 and Psest_2623 are separated by 11 nucleotides
Psest_2619: Psest_2619 - Flp pilus assembly protein, ATPase CpaF, at 2,801,614 to 2,803,038
_2619
Psest_2620: Psest_2620 - Flp pilus assembly protein, ATPase CpaE, at 2,803,028 to 2,804,257
_2620
Psest_2621: Psest_2621 - TadE-like protein., at 2,804,251 to 2,804,754
_2621
Psest_2622: Psest_2622 - TadE-like protein., at 2,804,754 to 2,805,224
_2622
Psest_2623: Psest_2623 - Flp pilus assembly protein TadG, at 2,805,236 to 2,806,570
_2623
Group
Condition
Psest
_2619
Psest
_2620
Psest
_2621
Psest
_2622
Psest
_2623
stress
Def Cephalothin 0.08 mg/ml
-0.3
-0.1
-1.4
-0.5
-0.4
nitrogen source
nitrite (N)
-0.0
-0.4
-0.4
-0.9
-0.3
nitrogen source
Cytosine (N)
-0.3
-0.3
-0.8
-0.2
-0.4
nitrogen source
L-Alanine (N)
-0.3
-0.2
-0.8
-0.2
-0.5
stress
Def A22 0.015 mg/ml
-0.2
+0.0
-0.6
-0.8
-0.4
nitrogen source
L-Isoleucine (N)
-0.4
-0.0
-1.0
+0.3
-0.5
RCH2 grown on a colony of Serratia
-0.7
-0.6
+0.5
-1.0
+0.3
stress
Furfuryl Alcohol 0.2 vol%
+0.1
+0.1
-0.6
-1.0
+0.2
stress
Def Carbenicillin 0.008 mg/ml
+0.2
+0.2
-1.6
+0.3
-0.2
stress
Furfuryl Alcohol 0.05 vol%
-0.4
+0.0
-1.2
+0.3
+0.1
RCH2 grown on a colony of Serratia
+0.1
+0.3
-0.5
-1.2
+0.1
stress
Nalidixic 0.00390625 mg/ml
+0.2
+0.4
-1.1
-0.4
+0.2
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.0
+0.2
-1.2
+0.7
-0.3
temperature
LB 30C timecourse1 timepoint 1
+0.5
-0.2
-0.7
-0.4
+0.4
carbon source
propionate (C)
-0.6
-0.7
+1.1
-0.3
+0.1
stress
Def Carbenicillin 0.02 mg/ml
-0.2
+0.3
+0.8
-0.8
-0.4
stress
methylglyoxal 0.0016 vol%
+0.1
-0.0
-1.0
+0.7
-0.1
stress
A22 0.005 mg/ml
+0.1
-0.1
+0.7
-0.9
-0.2
RCH2 grown on a colony of N2C3
+0.8
-0.3
-0.8
+0.0
+0.1
RCH2 grown on a colony of ecoli
+0.2
+0.2
-0.4
+1.3
-0.2
RCH2 grown on a colony of N2A2
+0.7
+0.3
-0.7
+0.8
+0.3
temperature
LB 30C timecourse2 timepoint 2
-0.1
+0.0
+0.2
+1.2
+0.4
stress
Lomefloxacin 0.0001 mM
+0.2
+0.1
+0.7
+0.7
+0.2
stress
Def Chlorate 40 mM
+0.4
+0.1
+1.0
+0.4
+0.2
stress
Def Thallium(I) acetate 0.125 mg/ml
+0.6
+0.1
+0.8
+0.2
+0.4
carbon source
L-tyrosine (C)
+0.1
-0.3
+0.7
+1.5
+0.2
stress
Gentamicin 0.0016 mg/ml
+0.5
+0.4
+0.6
+0.3
+0.4
stress
Fusidic 0.016 mg/ml
+0.6
+0.2
+0.3
+0.9
+0.3
nitrogen source
L-Glutamic (N)
+0.5
+0.2
+0.5
+0.9
+0.3
stress
Chlorate 75 mM
+0.5
-0.3
+1.0
+0.7
+0.8
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