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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2562 and Psest_2563 are separated by 49 nucleotides
Psest_2563 and Psest_2564 overlap by 4 nucleotides
Psest_2564 and Psest_2565 are separated by 101 nucleotides
Psest_2565 and Psest_2566 are separated by 136 nucleotides
Psest_2562: Psest_2562 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 2,743,205 to 2,745,541
_2562
Psest_2563: Psest_2563 - Arabinose efflux permease, at 2,745,591 to 2,746,826
_2563
Psest_2564: Psest_2564 - NAD(P)H:quinone oxidoreductase, type IV, at 2,746,823 to 2,747,449
_2564
Psest_2565: Psest_2565 - Transcriptional regulator, at 2,747,551 to 2,748,459
_2565
Psest_2566: Psest_2566 - Uncharacterized protein conserved in bacteria, at 2,748,596 to 2,749,075
_2566
Group
Condition
Psest
_2562
Psest
_2563
Psest
_2564
Psest
_2565
Psest
_2566
stress
L-Lysine 200 mM
+0.1
-0.1
-0.8
-0.3
-3.2
stress
D-Cycloserine 0.032 mg/ml
-0.3
-0.3
-0.6
-2.3
-0.6
stress
A22 0.005 mg/ml
-0.1
-0.2
+0.1
-1.5
-2.1
anaerobic
Nitrate/ lactate media with Nitrate 250mM
+0.0
-0.1
-0.6
-0.7
-2.4
stress
Thallium(I) acetate 0.08 mg/ml
-0.1
+0.0
-0.5
+0.8
-3.6
stress
perchlorate 25 mM
-0.0
-0.3
-0.5
-1.4
-1.1
stress
Def Cephalothin 0.08 mg/ml
-0.1
-0.5
-0.0
-0.6
-1.9
stress
Def Chlorate 40 mM
+0.0
-0.1
-0.6
-2.6
+0.2
stress
Nalidixic 0.00390625 mg/ml
-0.2
-0.3
-0.0
+0.6
-3.2
stress
Cisplatin 0.003 mg/ml
+0.1
-0.3
+0.1
-1.2
-1.7
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.0
+0.1
+0.2
+0.6
-3.6
nitrogen source
L-Citrulline (N)
-0.3
-0.3
+0.4
-1.5
-0.8
radiation
Ionizing radiation, 319.06 Gy,
+0.2
+0.1
+0.2
-0.5
-2.3
nitrogen source
L-Glutamic (N)
-0.2
-0.2
+0.8
-0.5
-1.9
stress
Thallium(I) acetate 0.09 mg/ml
+0.2
-0.0
+0.3
+0.3
-2.6
stress
A22 0.002 mg/ml
+0.0
-0.2
+0.3
+0.2
-2.2
stress
Bacitracin 0.25 mg/ml
-0.2
+0.5
+0.3
-0.4
-2.0
stress
Chlorate 75 mM
+0.7
+0.0
-0.7
+1.2
-2.7
stress
Zinc 0.12 mM
+0.4
+0.1
+0.2
+0.1
-2.2
vitamin
No vitamins t1
-0.2
-0.4
+0.3
+0.6
-1.6
radiation
Ionizing radiation, 319.06 Gy,
-0.1
+0.2
+0.6
+0.1
-2.0
metal limitation
Lactate-nitrite; anaerobic; with copper; sample1
+0.1
-0.0
-0.5
+0.8
-1.5
stress
Paraquat dichloride 0.015 mg/ml
+0.3
-0.2
-0.0
-2.1
+1.2
RCH2 grown on a colony of N2A2
+0.3
-0.1
-0.4
+1.1
-1.3
stress
Benzethonium chloride 0.01 mM
+0.2
+0.2
+0.6
+0.5
-1.5
lb
LB
+0.4
+0.2
-0.4
+1.3
-1.2
stress
Def Neomycin 0.0008 mg/ml
+0.1
+0.3
+0.6
-1.3
+1.0
stress
Spectinomycin 0.00625 mg/ml
-0.1
+0.1
+0.0
-0.8
+1.9
stress
Furfuryl Alcohol 0.05 vol%
+0.0
+0.6
+1.2
+0.6
+0.8
nitrogen source
nitrite (N)
-0.1
+0.7
+1.0
+0.7
+1.1
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