Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2562 and Psest_2563 are separated by 49 nucleotidesPsest_2563 and Psest_2564 overlap by 4 nucleotidesPsest_2564 and Psest_2565 are separated by 101 nucleotidesPsest_2565 and Psest_2566 are separated by 136 nucleotides Psest_2562: Psest_2562 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 2,743,205 to 2,745,541 _2562 Psest_2563: Psest_2563 - Arabinose efflux permease, at 2,745,591 to 2,746,826 _2563 Psest_2564: Psest_2564 - NAD(P)H:quinone oxidoreductase, type IV, at 2,746,823 to 2,747,449 _2564 Psest_2565: Psest_2565 - Transcriptional regulator, at 2,747,551 to 2,748,459 _2565 Psest_2566: Psest_2566 - Uncharacterized protein conserved in bacteria, at 2,748,596 to 2,749,075 _2566
Group Condition Psest_2562 Psest_2563 Psest_2564 Psest_2565 Psest_2566
stress L-Lysine 200 mM +0.1 -0.1 -0.8 -0.3 -3.2
stress D-Cycloserine 0.032 mg/ml -0.3 -0.3 -0.6 -2.3 -0.6
stress A22 0.005 mg/ml -0.1 -0.2 +0.1 -1.5 -2.1
anaerobic Nitrate/ lactate media with Nitrate 250mM +0.0 -0.1 -0.6 -0.7 -2.4
stress Thallium(I) acetate 0.08 mg/ml -0.1 +0.0 -0.5 +0.8 -3.6
stress perchlorate 25 mM -0.0 -0.3 -0.5 -1.4 -1.1
stress Def Cephalothin 0.08 mg/ml -0.1 -0.5 -0.0 -0.6 -1.9
stress Def Chlorate 40 mM +0.0 -0.1 -0.6 -2.6 +0.2
stress Nalidixic 0.00390625 mg/ml -0.2 -0.3 -0.0 +0.6 -3.2
stress Cisplatin 0.003 mg/ml +0.1 -0.3 +0.1 -1.2 -1.7
stress 1-ethyl-3-methylimidazolium acetate 40 mM -0.0 +0.1 +0.2 +0.6 -3.6
nitrogen source L-Citrulline (N) -0.3 -0.3 +0.4 -1.5 -0.8
radiation Ionizing radiation, 319.06 Gy, +0.2 +0.1 +0.2 -0.5 -2.3
nitrogen source L-Glutamic (N) -0.2 -0.2 +0.8 -0.5 -1.9
stress Thallium(I) acetate 0.09 mg/ml +0.2 -0.0 +0.3 +0.3 -2.6
stress A22 0.002 mg/ml +0.0 -0.2 +0.3 +0.2 -2.2
stress Bacitracin 0.25 mg/ml -0.2 +0.5 +0.3 -0.4 -2.0
stress Chlorate 75 mM +0.7 +0.0 -0.7 +1.2 -2.7
stress Zinc 0.12 mM +0.4 +0.1 +0.2 +0.1 -2.2
vitamin No vitamins t1 -0.2 -0.4 +0.3 +0.6 -1.6
radiation Ionizing radiation, 319.06 Gy, -0.1 +0.2 +0.6 +0.1 -2.0
metal limitation Lactate-nitrite; anaerobic; with copper; sample1 +0.1 -0.0 -0.5 +0.8 -1.5
stress Paraquat dichloride 0.015 mg/ml +0.3 -0.2 -0.0 -2.1 +1.2
RCH2 grown on a colony of N2A2 +0.3 -0.1 -0.4 +1.1 -1.3
stress Benzethonium chloride 0.01 mM +0.2 +0.2 +0.6 +0.5 -1.5
lb LB +0.4 +0.2 -0.4 +1.3 -1.2
stress Def Neomycin 0.0008 mg/ml +0.1 +0.3 +0.6 -1.3 +1.0
stress Spectinomycin 0.00625 mg/ml -0.1 +0.1 +0.0 -0.8 +1.9
stress Furfuryl Alcohol 0.05 vol% +0.0 +0.6 +1.2 +0.6 +0.8
nitrogen source nitrite (N) -0.1 +0.7 +1.0 +0.7 +1.1
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