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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2554 and Psest_2555 are separated by 187 nucleotides
Psest_2555 and Psest_2556 overlap by 4 nucleotides
Psest_2556 and Psest_2557 are separated by 277 nucleotides
Psest_2557 and Psest_2558 overlap by 1 nucleotides
Psest_2554: Psest_2554 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 2,734,465 to 2,736,495
_2554
Psest_2555: Psest_2555 - hypothetical protein, at 2,736,683 to 2,737,696
_2555
Psest_2556: Psest_2556 - AraC-type DNA-binding domain-containing proteins, at 2,737,693 to 2,738,730
_2556
Psest_2557: Psest_2557 - Protein of unknown function (DUF2474)., at 2,739,008 to 2,739,172
_2557
Psest_2558: Psest_2558 - cytochrome d oxidase, subunit II (cydB), at 2,739,172 to 2,740,179
_2558
Group
Condition
Psest
_2554
Psest
_2555
Psest
_2556
Psest
_2557
Psest
_2558
stress
nitrite 2.5 mM
-0.3
-0.1
-0.2
-1.5
-0.7
stress
Lactate-nitrate; anaerobic; dichromate stress sample1
+0.1
-0.1
-0.1
-2.4
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.1
+0.3
-0.5
-1.9
-0.4
stress
Neomycin 0.004 mg/ml
+0.2
-1.3
-0.5
-0.8
+0.1
stress
L-Lysine 200 mM
-0.0
-1.1
+0.1
-0.9
-0.2
stress
Nickel (II) chloride 1 mM
+0.1
+0.1
+0.1
-2.3
-0.0
stress
Lactate-nitrate; anaerobic; dichromate stress sample3
-0.1
-0.3
+0.0
-1.4
-0.2
stress
Nickel (II) chloride 1 mM
-0.1
-0.2
+0.1
-1.9
+0.3
stress
Carbenicillin 0.008 mg/ml
-0.1
-1.9
+0.5
-0.5
+0.2
stress
Chloride 200 mM
-0.3
+0.4
-1.1
-0.3
-0.3
stress
Neomycin 0.004 mg/ml
+0.0
-1.0
-0.4
+0.4
-0.4
stress
Nickel (II) chloride 0.8 mM
-0.0
+0.0
+0.1
-1.6
+0.5
RCH2 grown on a colony of N2C3
-0.2
+0.3
+0.2
-1.3
+0.1
stress
A22 0.002 mg/ml
+0.2
-1.1
-0.2
+0.5
-0.2
stress
A22 0.002 mg/ml
+0.1
-1.0
-0.5
+0.5
+0.2
stress
Carbenicillin 0.0065 mg/ml
-0.0
-1.3
+0.2
+0.5
-0.1
stress
A22 0.002 mg/ml
+0.0
-0.6
-0.6
+0.8
-0.3
stress
Carbenicillin 0.008 mg/ml
+0.1
-1.6
+0.5
+0.2
+0.4
stress
Chlorate 75 mM
-0.1
+0.8
-0.6
-0.6
+0.3
stress
Bacitracin 0.25 mg/ml
+0.2
-0.9
-0.0
+0.8
+0.1
stress
nitrite 2.5 mM
-0.3
+0.0
+0.2
+1.0
-0.7
stress
Def Vancomycin 0.016 mg/ml
+0.0
+1.2
-0.7
+0.2
-0.1
stress
Chloride 200 mM
-0.2
+0.9
-1.0
+0.9
+0.0
RCH2 grown on a colony of ecoli
-0.2
-0.2
+0.1
+1.6
-0.3
stress
nitrate 250 mM
-0.1
+1.0
-0.5
+0.6
+0.0
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.2
+0.4
-0.3
+0.8
+0.5
RCH2 grown on a colony of Serratia
+0.1
+0.0
+0.4
+1.5
-0.5
stress
Fusidic 0.016 mg/ml
-0.0
+1.1
-0.1
+0.5
+0.3
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.2
-0.3
-0.1
+2.4
+0.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.3
+1.0
-0.2
+1.3
+0.4
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