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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2511 and Psest_2512 are separated by 172 nucleotides
Psest_2512 and Psest_2513 are separated by 120 nucleotides
Psest_2513 and Psest_2514 are separated by 102 nucleotides
Psest_2514 and Psest_2515 are separated by 147 nucleotides
Psest_2511: Psest_2511 - molybdenum cofactor biosynthesis protein A, bacterial, at 2,689,502 to 2,690,497
_2511
Psest_2512: Psest_2512 - Kef-type K+ transport systems, predicted NAD-binding component, at 2,690,670 to 2,691,521
_2512
Psest_2513: Psest_2513 - Predicted membrane protein, at 2,691,642 to 2,692,055
_2513
Psest_2514: Psest_2514 - Predicted membrane protein, at 2,692,158 to 2,692,637
_2514
Psest_2515: Psest_2515 - cytochrome c oxidase, subunit II, at 2,692,785 to 2,693,675
_2515
Group
Condition
Psest
_2511
Psest
_2512
Psest
_2513
Psest
_2514
Psest
_2515
nitrogen source
nitrate (N)
-3.1
+0.0
-0.0
N.D.
-0.2
nitrogen source
nitrate (N)
-2.7
-0.3
+0.3
N.D.
-0.1
stress
A22 0.005 mg/ml
-0.7
-0.5
-0.6
N.D.
-0.7
RCH2 grown on a colony of Serratia
-0.7
-0.3
-0.9
N.D.
-0.4
stress
Carbenicillin 0.008 mg/ml
-0.4
-0.3
-1.3
N.D.
-0.4
stress
Choline Lysine 20 mM
-0.5
-0.4
-0.2
N.D.
-0.8
stress
Cobalt chloride 0.08 mM
-0.6
-0.3
-1.0
N.D.
+0.0
stress
Lactate-nitrate; anaerobic; copper stress sample1
-0.3
-0.3
-1.1
N.D.
-0.1
nitrogen source
nitrate (N)
-2.6
+0.2
+0.3
N.D.
+0.4
stress
Thallium(I) acetate 0.08 mg/ml
-0.3
-0.4
-0.8
N.D.
-0.2
stress
Carbenicillin 0.008 mg/ml
-0.4
-0.2
-0.9
N.D.
-0.1
RCH2 grown on a colony of N2F3
-0.5
+0.3
-0.6
N.D.
-0.7
stress
syringaldehyde 3 mM
-0.5
-0.6
+0.1
N.D.
-0.4
stress
acetate 80 mM
-0.2
+0.1
-0.6
N.D.
-0.8
stress
Nalidixic 0.00390625 mg/ml
-0.4
+0.1
-1.2
N.D.
+0.2
RCH2 grown on a colony of Serratia
-0.6
+0.3
-0.4
N.D.
-0.4
stress
L-Lysine 200 mM
-0.6
-0.4
+0.4
N.D.
-0.4
nitrogen source
L-Glutamic (N)
-0.5
-0.1
-0.8
N.D.
+0.3
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.8
-0.5
+0.2
N.D.
+0.3
stress
nitrate 250 mM
-0.9
-0.5
+0.0
N.D.
+0.7
stress
Def Carbenicillin 0.02 mg/ml
+0.4
+0.1
-1.2
N.D.
+0.1
RCH2 grown on a colony of 8R2A
-0.8
-0.4
+0.5
N.D.
+0.4
carbon source
D-Gluconic Acid (C)
-0.2
+0.1
-1.0
N.D.
+0.7
stress
Cephalothin 0.04 mg/ml
+0.1
-0.6
-0.4
N.D.
+0.7
carbon source
L-tyrosine (C)
-0.3
+0.2
-0.6
N.D.
+0.5
RCH2 grown on a colony of N2F3
-1.0
-0.1
+0.8
N.D.
+0.3
stress
Def Carbenicillin 0.008 mg/ml
-0.3
-0.6
+0.3
N.D.
+1.0
stress
Nickel (II) chloride 0.8 mM
-0.3
+0.4
+0.6
N.D.
+0.5
carbon source
propionate (C)
-0.3
+0.5
+0.2
N.D.
+0.8
lb
LB
-0.0
+0.4
+0.6
N.D.
+0.7
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