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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2471 and Psest_2472 are separated by 430 nucleotides
Psest_2472 and Psest_2473 are separated by 11 nucleotides
Psest_2473 and Psest_2474 are separated by 97 nucleotides
Psest_2474 and Psest_2475 are separated by 174 nucleotides
Psest_2471: Psest_2471 - Glycerol-3-phosphate dehydrogenase, at 2,640,446 to 2,641,468
_2471
Psest_2472: Psest_2472 - beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA, at 2,641,899 to 2,642,414
_2472
Psest_2473: Psest_2473 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 2,642,426 to 2,643,643
_2473
Psest_2474: Psest_2474 - AraC-type DNA-binding domain-containing proteins, at 2,643,741 to 2,644,784
_2474
Psest_2475: Psest_2475 - Acyl-CoA dehydrogenases, at 2,644,959 to 2,646,137
_2475
Group
Condition
Psest
_2471
Psest
_2472
Psest
_2473
Psest
_2474
Psest
_2475
RCH2 grown on a colony of 8R2A
N.D.
N.D.
N.D.
-1.1
-0.4
RCH2 grown on a colony of N2F3
N.D.
N.D.
N.D.
-0.7
-0.7
RCH2 grown on a colony of N2A2
N.D.
N.D.
N.D.
-0.5
-0.7
stress
Chlorate 75 mM
N.D.
N.D.
N.D.
-1.0
-0.2
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
N.D.
-0.3
-0.8
RCH2 grown on a colony of ecoli
N.D.
N.D.
N.D.
+0.2
-1.3
RCH2 grown on a colony of N2A2
N.D.
N.D.
N.D.
-0.1
-0.9
nitrogen source
L-Glutamic (N)
N.D.
N.D.
N.D.
-0.2
-0.8
stress
Thallium(I) acetate 0.1 mg/ml
N.D.
N.D.
N.D.
-0.5
-0.4
stress
5-Hydroxymethylfurfural 5 mM
N.D.
N.D.
N.D.
-0.4
-0.5
stress
L-Lysine 200 mM
N.D.
N.D.
N.D.
-0.5
-0.3
stress
Nickel (II) chloride 0.8 mM
N.D.
N.D.
N.D.
-0.2
-0.6
nitrogen source
Urea (N)
N.D.
N.D.
N.D.
-0.3
-0.5
stress
Vanillin 2 mM
N.D.
N.D.
N.D.
+0.2
-1.0
RCH2 grown on a colony of N2C3
N.D.
N.D.
N.D.
+0.3
-0.7
stress
Nickel (II) chloride 0.8 mM
N.D.
N.D.
N.D.
-0.5
+0.3
stress
Benzethonium chloride 0.0125 mM
N.D.
N.D.
N.D.
+0.4
-0.6
stress
Def Nalidixic 0.001 mg/ml
N.D.
N.D.
N.D.
-0.5
+0.4
stress
nitrate 200 mM
N.D.
N.D.
N.D.
-0.6
+0.4
stress
Def Chlorate 20 mM
N.D.
N.D.
N.D.
+0.3
-0.4
stress
perchlorate 25 mM
N.D.
N.D.
N.D.
-0.5
+0.5
carbon source
butyrate (C)
N.D.
N.D.
N.D.
+0.4
-0.4
stress
Neomycin 0.004 mg/ml
N.D.
N.D.
N.D.
-0.4
+0.5
stress
Def 2-Furfuraldehyde 0.032 vol%
N.D.
N.D.
N.D.
+0.5
-0.3
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
N.D.
+0.6
-0.3
stress
D-Cycloserine 0.032 mg/ml
N.D.
N.D.
N.D.
+0.6
-0.2
stress
Lactate-nitrate; anaerobic; cadmium stress sample1
N.D.
N.D.
N.D.
+0.3
+0.5
stress
nitrite 2.5 mM
N.D.
N.D.
N.D.
+0.2
+0.6
carbon source
propionate (C)
N.D.
N.D.
N.D.
+1.0
-0.2
RCH2 grown on a colony of Serratia
N.D.
N.D.
N.D.
+0.7
+0.2
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