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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2417 and Psest_2418 are separated by 1099 nucleotides
Psest_2418 and Psest_2419 are separated by 7 nucleotides
Psest_2419 and Psest_2420 are separated by 45 nucleotides
Psest_2420 and Psest_2421 are separated by 107 nucleotides
Psest_2417: Psest_2417 - TonB-dependent receptor, at 2,577,191 to 2,579,674
_2417
Psest_2418: Psest_2418 - diguanylate cyclase (GGDEF) domain, at 2,580,774 to 2,581,688
_2418
Psest_2419: Psest_2419 - AraC-type DNA-binding domain-containing proteins, at 2,581,696 to 2,582,733
_2419
Psest_2420: Psest_2420 - Transcriptional regulator, at 2,582,779 to 2,583,666
_2420
Psest_2421: Psest_2421 - formate dehydrogenase family accessory protein FdhD, at 2,583,774 to 2,584,577
_2421
Group
Condition
Psest
_2417
Psest
_2418
Psest
_2419
Psest
_2420
Psest
_2421
nitrogen source
L-Isoleucine (N)
-0.5
N.D.
-1.8
-0.5
-0.7
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.2
N.D.
-1.2
-0.7
-0.3
stress
Furfuryl Alcohol 0.05 vol%
-0.2
N.D.
-1.3
-0.0
-0.6
stress
Nalidixic 0.00390625 mg/ml
-0.2
N.D.
-0.8
+0.0
-0.7
stress
Benzethonium chloride 0.0125 mM
-0.2
N.D.
-0.7
-0.7
-0.0
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-0.3
N.D.
-1.3
+0.5
-0.4
temperature
LB 30C timecourse2 timepoint 1
-0.1
N.D.
-0.9
+0.2
-0.4
stress
methylglyoxal 0.0016 vol%
-0.1
N.D.
-0.7
+0.3
-0.6
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.3
N.D.
-0.6
+0.5
-0.6
stress
Vanillin 2 mM
-0.1
N.D.
-0.4
+0.4
-0.7
stress
Carbenicillin 0.0065 mg/ml
+0.2
N.D.
-0.9
+0.3
-0.2
stress
Doxycycline hyclate 0.0002 mg/ml
+0.1
N.D.
-0.6
+0.6
-0.2
RCH2 grown on a colony of N2A2
+0.0
N.D.
-0.8
+0.7
+0.2
lb
LB
+0.1
N.D.
-0.4
-0.3
+0.8
radiation
Ionizing radiation, 319.06 Gy,
-0.1
N.D.
-0.7
+0.5
+0.4
stress
Nalidixic 0.00390625 mg/ml
+0.4
N.D.
+0.3
-0.7
+0.2
nitrogen source
Glycine (N)
+0.1
N.D.
-0.6
+0.2
+0.5
carbon source
L-tyrosine (C)
+0.0
N.D.
+0.6
+0.6
-0.6
RCH2 grown on a colony of N2A2
-0.0
N.D.
-0.5
+0.6
+0.5
stress
nitrite 2.5 mM
-0.2
N.D.
+0.8
-0.3
+0.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.2
N.D.
+0.7
+0.4
-0.3
stress
Cephalothin 0.04 mg/ml
+0.4
N.D.
+1.0
-0.8
+0.6
RCH2 grown on a colony of N2F3
-0.2
N.D.
-0.1
+0.4
+1.1
RCH2 grown on a colony of 8R2A
+0.3
N.D.
+0.6
+0.5
+0.1
stress
Chlorate 75 mM
+0.2
N.D.
+0.5
+1.0
-0.2
stress
nitrate 250 mM
+0.3
N.D.
+0.4
+0.3
+0.5
stress
Def Polymyxin B sulfate 0.00008 mg/ml
-0.1
N.D.
+0.5
+0.3
+0.8
carbon source
propionate (C)
+0.5
N.D.
+1.3
+0.3
+0.8
stress
Def Carbenicillin 0.02 mg/ml
+0.4
N.D.
+0.9
+0.3
+1.2
stress
Def Carbenicillin 0.008 mg/ml
+0.2
N.D.
+0.8
+0.8
+1.2
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