Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2417 and Psest_2418 are separated by 1099 nucleotidesPsest_2418 and Psest_2419 are separated by 7 nucleotidesPsest_2419 and Psest_2420 are separated by 45 nucleotidesPsest_2420 and Psest_2421 are separated by 107 nucleotides Psest_2417: Psest_2417 - TonB-dependent receptor, at 2,577,191 to 2,579,674 _2417 Psest_2418: Psest_2418 - diguanylate cyclase (GGDEF) domain, at 2,580,774 to 2,581,688 _2418 Psest_2419: Psest_2419 - AraC-type DNA-binding domain-containing proteins, at 2,581,696 to 2,582,733 _2419 Psest_2420: Psest_2420 - Transcriptional regulator, at 2,582,779 to 2,583,666 _2420 Psest_2421: Psest_2421 - formate dehydrogenase family accessory protein FdhD, at 2,583,774 to 2,584,577 _2421
Group Condition Psest_2417 Psest_2418 Psest_2419 Psest_2420 Psest_2421
nitrogen source L-Isoleucine (N) -0.5 N.D. -1.8 -0.5 -0.7
stress Def Benzalkonium Chloride 0.002 mg/ml -0.2 N.D. -1.2 -0.7 -0.3
stress Furfuryl Alcohol 0.05 vol% -0.2 N.D. -1.3 -0.0 -0.6
stress Nalidixic 0.00390625 mg/ml -0.2 N.D. -0.8 +0.0 -0.7
stress Benzethonium chloride 0.0125 mM -0.2 N.D. -0.7 -0.7 -0.0
anaerobic Nitrite/ lactate media with Nitrite 20mM -0.3 N.D. -1.3 +0.5 -0.4
temperature LB 30C timecourse2 timepoint 1 -0.1 N.D. -0.9 +0.2 -0.4
stress methylglyoxal 0.0016 vol% -0.1 N.D. -0.7 +0.3 -0.6
stress Polymyxin B sulfate 0.0001 mg/ml -0.3 N.D. -0.6 +0.5 -0.6
stress Vanillin 2 mM -0.1 N.D. -0.4 +0.4 -0.7
stress Carbenicillin 0.0065 mg/ml +0.2 N.D. -0.9 +0.3 -0.2
stress Doxycycline hyclate 0.0002 mg/ml +0.1 N.D. -0.6 +0.6 -0.2
RCH2 grown on a colony of N2A2 +0.0 N.D. -0.8 +0.7 +0.2
lb LB +0.1 N.D. -0.4 -0.3 +0.8
radiation Ionizing radiation, 319.06 Gy, -0.1 N.D. -0.7 +0.5 +0.4
stress Nalidixic 0.00390625 mg/ml +0.4 N.D. +0.3 -0.7 +0.2
nitrogen source Glycine (N) +0.1 N.D. -0.6 +0.2 +0.5
carbon source L-tyrosine (C) +0.0 N.D. +0.6 +0.6 -0.6
RCH2 grown on a colony of N2A2 -0.0 N.D. -0.5 +0.6 +0.5
stress nitrite 2.5 mM -0.2 N.D. +0.8 -0.3 +0.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +0.2 N.D. +0.7 +0.4 -0.3
stress Cephalothin 0.04 mg/ml +0.4 N.D. +1.0 -0.8 +0.6
RCH2 grown on a colony of N2F3 -0.2 N.D. -0.1 +0.4 +1.1
RCH2 grown on a colony of 8R2A +0.3 N.D. +0.6 +0.5 +0.1
stress Chlorate 75 mM +0.2 N.D. +0.5 +1.0 -0.2
stress nitrate 250 mM +0.3 N.D. +0.4 +0.3 +0.5
stress Def Polymyxin B sulfate 0.00008 mg/ml -0.1 N.D. +0.5 +0.3 +0.8
carbon source propionate (C) +0.5 N.D. +1.3 +0.3 +0.8
stress Def Carbenicillin 0.02 mg/ml +0.4 N.D. +0.9 +0.3 +1.2
stress Def Carbenicillin 0.008 mg/ml +0.2 N.D. +0.8 +0.8 +1.2
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