Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2413 and Psest_2414 overlap by 1 nucleotidesPsest_2414 and Psest_2415 are separated by 11 nucleotidesPsest_2415 and Psest_2416 are separated by 67 nucleotidesPsest_2416 and Psest_2417 are separated by 74 nucleotides Psest_2413: Psest_2413 - Periplasmic protein TonB, links inner and outer membranes, at 2,573,155 to 2,573,943 _2413 Psest_2414: Psest_2414 - TolR protein, at 2,573,943 to 2,574,407 _2414 Psest_2415: Psest_2415 - TolQ protein, at 2,574,419 to 2,575,132 _2415 Psest_2416: Psest_2416 - 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase), at 2,575,200 to 2,577,116 _2416 Psest_2417: Psest_2417 - TonB-dependent receptor, at 2,577,191 to 2,579,674 _2417
Group Condition Psest_2413 Psest_2414 Psest_2415 Psest_2416 Psest_2417
nitrogen source L-Alanine (N) -1.5 -0.3 -0.5 -0.2 -0.3
stress Def A22 0.015 mg/ml -1.3 -0.6 -0.5 -0.2 -0.2
nitrogen source L-Glutamic (N) -2.8 +0.2 -0.1 -0.1 +0.2
lb LB -0.1 -1.1 -0.4 -0.4 -0.2
RCH2 grown on a colony of ecoli -0.3 -0.3 -0.5 -1.2 +0.0
stress Neomycin 0.004 mg/ml -0.6 -0.7 -0.5 -0.3 -0.1
stress A22 0.005 mg/ml +0.4 -1.5 -0.5 -0.2 -0.2
nitrogen source Cytosine (N) -1.1 -0.7 -0.1 -0.2 -0.1
stress Polymyxin B sulfate 0.0001 mg/ml -0.3 -0.9 -0.0 -0.5 -0.3
nitrogen source nitrite (N) +0.9 -0.6 -0.8 -0.8 -0.3
nitrogen source L-Isoleucine (N) +0.7 -1.6 +0.1 -0.0 -0.5
stress 5-Hydroxymethylfurfural 5 mM -0.3 -0.7 -0.4 -0.3 +0.4
carbon source L-tyrosine (C) +0.4 +0.2 -0.7 -0.4 +0.3
stress Def Lomefloxacin 0.00004 mM +1.1 -0.2 -0.3 -0.6 -0.1
RCH2 grown on a colony of Serratia +0.4 +0.8 -1.1 -0.2 +0.1
stress nitrate 200 mM +0.4 +0.3 -0.9 +0.3 -0.1
vitamin With vitamins t2 +1.2 -0.9 -0.7 +0.3 +0.2
temperature LB 30C timecourse1 timepoint 1 +0.7 -1.4 -0.1 +0.8 +0.2
vitamin With vitamins t1 +1.0 -0.5 -0.9 +0.4 +0.2
RCH2 grown on a colony of N2C3 +0.1 +1.1 -1.1 +0.3 -0.1
lb LB -0.3 +0.4 -0.5 +0.6 +0.2
stress Lactate-nitrate; anaerobic; dichromate stress sample3 +1.0 -0.7 +0.5 -0.1 -0.2
temperature Glucose defined 30C timecourse1 timepoint 3 +0.9 -0.8 +0.1 +0.4 +0.1
stress Def Carbenicillin 0.008 mg/ml +1.9 -0.3 -0.7 -0.1 +0.2
nutrient Min media with glucose +1.0 -0.4 -0.1 +0.3 +0.2
stress Def Carbenicillin 0.02 mg/ml +0.6 -0.7 +1.0 -0.0 +0.4
temperature LB 30C timecourse1 timepoint 3 +1.1 -0.2 +0.4 +0.4 +0.2
stress Chlorate 75 mM +0.9 +1.6 -0.4 +0.0 +0.2
stress Def Chloride 400 mM +0.6 +0.8 +0.8 +0.1 +0.0
stress Nalidixic 0.00390625 mg/ml +0.7 +0.8 +0.2 +0.4 +0.4
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