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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2413 and Psest_2414 overlap by 1 nucleotides
Psest_2414 and Psest_2415 are separated by 11 nucleotides
Psest_2415 and Psest_2416 are separated by 67 nucleotides
Psest_2416 and Psest_2417 are separated by 74 nucleotides
Psest_2413: Psest_2413 - Periplasmic protein TonB, links inner and outer membranes, at 2,573,155 to 2,573,943
_2413
Psest_2414: Psest_2414 - TolR protein, at 2,573,943 to 2,574,407
_2414
Psest_2415: Psest_2415 - TolQ protein, at 2,574,419 to 2,575,132
_2415
Psest_2416: Psest_2416 - 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase), at 2,575,200 to 2,577,116
_2416
Psest_2417: Psest_2417 - TonB-dependent receptor, at 2,577,191 to 2,579,674
_2417
Group
Condition
Psest
_2413
Psest
_2414
Psest
_2415
Psest
_2416
Psest
_2417
nitrogen source
L-Alanine (N)
-1.5
-0.3
-0.5
-0.2
-0.3
stress
Def A22 0.015 mg/ml
-1.3
-0.6
-0.5
-0.2
-0.2
nitrogen source
L-Glutamic (N)
-2.8
+0.2
-0.1
-0.1
+0.2
lb
LB
-0.1
-1.1
-0.4
-0.4
-0.2
RCH2 grown on a colony of ecoli
-0.3
-0.3
-0.5
-1.2
+0.0
stress
Neomycin 0.004 mg/ml
-0.6
-0.7
-0.5
-0.3
-0.1
stress
A22 0.005 mg/ml
+0.4
-1.5
-0.5
-0.2
-0.2
nitrogen source
Cytosine (N)
-1.1
-0.7
-0.1
-0.2
-0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.3
-0.9
-0.0
-0.5
-0.3
nitrogen source
nitrite (N)
+0.9
-0.6
-0.8
-0.8
-0.3
nitrogen source
L-Isoleucine (N)
+0.7
-1.6
+0.1
-0.0
-0.5
stress
5-Hydroxymethylfurfural 5 mM
-0.3
-0.7
-0.4
-0.3
+0.4
carbon source
L-tyrosine (C)
+0.4
+0.2
-0.7
-0.4
+0.3
stress
Def Lomefloxacin 0.00004 mM
+1.1
-0.2
-0.3
-0.6
-0.1
RCH2 grown on a colony of Serratia
+0.4
+0.8
-1.1
-0.2
+0.1
stress
nitrate 200 mM
+0.4
+0.3
-0.9
+0.3
-0.1
vitamin
With vitamins t2
+1.2
-0.9
-0.7
+0.3
+0.2
temperature
LB 30C timecourse1 timepoint 1
+0.7
-1.4
-0.1
+0.8
+0.2
vitamin
With vitamins t1
+1.0
-0.5
-0.9
+0.4
+0.2
RCH2 grown on a colony of N2C3
+0.1
+1.1
-1.1
+0.3
-0.1
lb
LB
-0.3
+0.4
-0.5
+0.6
+0.2
stress
Lactate-nitrate; anaerobic; dichromate stress sample3
+1.0
-0.7
+0.5
-0.1
-0.2
temperature
Glucose defined 30C timecourse1 timepoint 3
+0.9
-0.8
+0.1
+0.4
+0.1
stress
Def Carbenicillin 0.008 mg/ml
+1.9
-0.3
-0.7
-0.1
+0.2
nutrient
Min media with glucose
+1.0
-0.4
-0.1
+0.3
+0.2
stress
Def Carbenicillin 0.02 mg/ml
+0.6
-0.7
+1.0
-0.0
+0.4
temperature
LB 30C timecourse1 timepoint 3
+1.1
-0.2
+0.4
+0.4
+0.2
stress
Chlorate 75 mM
+0.9
+1.6
-0.4
+0.0
+0.2
stress
Def Chloride 400 mM
+0.6
+0.8
+0.8
+0.1
+0.0
stress
Nalidixic 0.00390625 mg/ml
+0.7
+0.8
+0.2
+0.4
+0.4
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