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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2406 and Psest_2407 overlap by 1 nucleotides
Psest_2407 and Psest_2408 are separated by 167 nucleotides
Psest_2408 and Psest_2409 are separated by 29 nucleotides
Psest_2409 and Psest_2410 are separated by 3 nucleotides
Psest_2406: Psest_2406 - nitrite reductase [NAD(P)H], large subunit, at 2,560,243 to 2,562,801
_2406
Psest_2407: Psest_2407 - nitrite reductase [NAD(P)H], small subunit, at 2,562,801 to 2,563,184
_2407
Psest_2408: Psest_2408 - Formate/nitrite family of transporters, at 2,563,352 to 2,564,164
_2408
Psest_2409: Psest_2409 - Serine/threonine protein phosphatase, at 2,564,194 to 2,565,945
_2409
Psest_2410: Psest_2410 - Superfamily I DNA and RNA helicases, at 2,565,949 to 2,567,919
_2410
Group
Condition
Psest
_2406
Psest
_2407
Psest
_2408
Psest
_2409
Psest
_2410
nitrogen source
nitrate (N)
-1.3
-1.5
+0.0
-0.2
-0.0
lb
LB
-0.3
-0.4
-0.5
-0.4
-0.7
stress
5-Hydroxymethylfurfural 5 mM
-0.2
-0.3
-0.4
-0.5
-0.8
stress
Def A22 0.015 mg/ml
-0.2
-0.9
-0.3
-0.3
-0.2
nitrogen source
nitrate (N)
-0.8
-0.8
+0.2
-0.2
-0.2
nitrogen source
L-Isoleucine (N)
-0.2
-1.2
-0.1
+0.1
-0.2
stress
Spectinomycin 0.00625 mg/ml
+0.2
-1.2
+0.0
-0.4
-0.2
nitrogen source
nitrate (N)
-1.1
-0.3
-0.1
+0.2
-0.2
stress
Def Lomefloxacin 0.00004 mM
-0.1
-1.4
-0.0
+0.2
+0.1
RCH2 grown on a colony of N2F3
-0.7
-0.4
+0.4
-0.5
+0.0
nitrogen source
L-Citrulline (N)
-0.3
+0.4
-0.3
-0.5
-0.5
stress
Spectinomycin 0.00625 mg/ml
+0.3
-1.0
+0.3
-0.5
+0.1
nitrogen source
D-Alanine (N)
-0.2
-1.1
+0.3
+0.2
-0.1
stress
Cisplatin 0.003 mg/ml
+0.2
+0.6
-0.0
-0.2
-0.9
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample3
-0.1
-1.0
+0.2
+0.3
+0.4
stress
Nalidixic 0.00390625 mg/ml
-0.3
+1.2
-0.1
+0.1
-0.9
stress
Furfuryl Alcohol 0.05 vol%
+0.1
+0.8
-0.3
-0.4
-0.3
RCH2 grown on a colony of N2C3
+0.4
-0.3
+0.2
+0.4
-0.6
nutrient
L-tyrosine
-0.0
+0.7
+0.3
-0.4
-0.4
stress
Lactate-nitrate; anaerobic; copper stress sample2
-0.2
-0.6
+0.3
+0.4
+0.3
carbon source
butyrate (C)
+0.1
-0.7
+0.5
+0.2
+0.3
stress
Nalidixic 0.00390625 mg/ml
+0.4
-0.7
+0.2
+1.3
-0.8
RCH2 grown on a colony of N2F3
-0.1
+0.6
+0.4
-0.8
+0.5
vitamin
No vitamins t2
-0.1
+1.3
+0.0
-0.3
+0.2
stress
Fusidic 0.016 mg/ml
+0.0
-0.6
+1.0
+0.5
+0.5
stress
Chlorate 75 mM
+0.4
+0.8
+0.5
+0.1
+0.0
stress
nitrate 200 mM
+0.1
+0.9
+0.8
+0.2
+0.1
stress
nitrate 250 mM
+0.3
+0.2
+0.6
+0.6
+0.6
RCH2 grown on a colony of 8R2A
-0.1
+1.4
+0.6
+0.5
+0.5
stress
Cephalothin 0.04 mg/ml
+0.3
+0.6
+0.8
+0.5
+1.0
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