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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2403 and Psest_2404 are separated by 19 nucleotides
Psest_2404 and Psest_2405 are separated by 219 nucleotides
Psest_2405 and Psest_2406 are separated by 447 nucleotides
Psest_2406 and Psest_2407 overlap by 1 nucleotides
Psest_2403: Psest_2403 - Methyl-accepting chemotaxis protein, at 2,555,967 to 2,557,460
_2403
Psest_2404: Psest_2404 - Coproporphyrinogen III oxidase and related Fe-S oxidoreductases, at 2,557,480 to 2,558,817
_2404
Psest_2405: Psest_2405 - NAD-dependent protein deacetylases, SIR2 family, at 2,559,037 to 2,559,795
_2405
Psest_2406: Psest_2406 - nitrite reductase [NAD(P)H], large subunit, at 2,560,243 to 2,562,801
_2406
Psest_2407: Psest_2407 - nitrite reductase [NAD(P)H], small subunit, at 2,562,801 to 2,563,184
_2407
Group
Condition
Psest
_2403
Psest
_2404
Psest
_2405
Psest
_2406
Psest
_2407
nitrogen source
L-Isoleucine (N)
-1.0
-0.3
-1.6
-0.2
-1.2
stress
D-Cycloserine 0.032 mg/ml
-0.4
-0.2
-1.4
+0.1
-1.0
nitrogen source
nitrate (N)
-0.0
+0.3
-0.0
-1.3
-1.5
stress
Def Doxycycline hyclate 0.0006 mg/ml
-0.3
+0.1
-1.1
-0.3
-0.8
lb
LB
-0.7
-0.0
-0.9
-0.3
-0.4
stress
nitrate 200 mM
+0.1
-0.7
-0.3
-0.0
-1.2
stress
Def Lomefloxacin 0.00004 mM
-0.2
+0.3
-0.7
-0.1
-1.4
nitrogen source
nitrate (N)
-0.1
+0.2
-0.6
-1.1
-0.3
stress
Doxycycline hyclate 0.0002 mg/ml
-0.8
-0.2
-0.7
-0.3
+0.7
temperature
Glucose defined 30C timecourse1 timepoint 2
+0.2
+0.1
-1.4
-0.1
+0.5
temperature
LB 30C timecourse1 timepoint 3
+0.4
+0.6
-0.5
+0.1
-0.9
carbon source
L-tyrosine (C)
-0.4
+0.7
-0.2
+0.4
-0.7
stress
Lactate-nitrate; anaerobic; cobalt stress sample1
+0.1
-0.5
+1.0
-0.1
-0.6
temperature
LB 30C timecourse1 timepoint 2
+0.4
-0.2
-0.9
+0.3
+0.4
stress
methylglyoxal 0.0016 vol%
-0.2
-0.2
+1.2
-0.3
-0.4
stress
Spectinomycin 0.00625 mg/ml
+0.2
+0.0
+1.0
+0.2
-1.2
stress
Benzalkonium Chloride 0.002 mg/ml
-0.1
+0.3
+1.1
-0.6
-0.2
carbon source
L-Leucine (C)
+0.2
+0.1
+1.0
+0.0
-0.8
stress
Lactate-nitrate; anaerobic; nickel stress sample3
+0.4
-0.3
+1.0
-0.0
-0.4
stress
Spectinomycin 0.00625 mg/ml
+0.2
+0.2
+1.2
+0.3
-1.0
temperature
LB 26C sample1
+0.4
+0.7
-0.6
-0.1
+0.4
vitamin
No vitamins t2
-0.2
-0.3
+0.3
-0.1
+1.3
stress
Def Neomycin 0.0008 mg/ml
-0.1
+0.5
+1.5
-0.3
-0.3
stress
Cephalothin 0.04 mg/ml
+0.2
+0.7
-0.5
+0.3
+0.6
stress
Chlorate 75 mM
-0.4
-0.1
+0.7
+0.4
+0.8
radiation
Ionizing radiation, 319.06 Gy,
-0.0
+0.3
+0.6
-0.2
+1.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.2
+0.1
+1.9
+0.0
-0.1
lb
LB
-0.1
+0.5
+1.4
-0.1
+0.2
stress
Lomefloxacin 0.0001 mM
-0.3
+0.5
+1.7
-0.1
+0.4
RCH2 grown on a colony of 8R2A
-0.1
+0.1
+1.1
-0.1
+1.4
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