Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2403 and Psest_2404 are separated by 19 nucleotidesPsest_2404 and Psest_2405 are separated by 219 nucleotidesPsest_2405 and Psest_2406 are separated by 447 nucleotidesPsest_2406 and Psest_2407 overlap by 1 nucleotides Psest_2403: Psest_2403 - Methyl-accepting chemotaxis protein, at 2,555,967 to 2,557,460 _2403 Psest_2404: Psest_2404 - Coproporphyrinogen III oxidase and related Fe-S oxidoreductases, at 2,557,480 to 2,558,817 _2404 Psest_2405: Psest_2405 - NAD-dependent protein deacetylases, SIR2 family, at 2,559,037 to 2,559,795 _2405 Psest_2406: Psest_2406 - nitrite reductase [NAD(P)H], large subunit, at 2,560,243 to 2,562,801 _2406 Psest_2407: Psest_2407 - nitrite reductase [NAD(P)H], small subunit, at 2,562,801 to 2,563,184 _2407
Group Condition Psest_2403 Psest_2404 Psest_2405 Psest_2406 Psest_2407
nitrogen source L-Isoleucine (N) -1.0 -0.3 -1.6 -0.2 -1.2
stress D-Cycloserine 0.032 mg/ml -0.4 -0.2 -1.4 +0.1 -1.0
nitrogen source nitrate (N) -0.0 +0.3 -0.0 -1.3 -1.5
stress Def Doxycycline hyclate 0.0006 mg/ml -0.3 +0.1 -1.1 -0.3 -0.8
lb LB -0.7 -0.0 -0.9 -0.3 -0.4
stress nitrate 200 mM +0.1 -0.7 -0.3 -0.0 -1.2
stress Def Lomefloxacin 0.00004 mM -0.2 +0.3 -0.7 -0.1 -1.4
nitrogen source nitrate (N) -0.1 +0.2 -0.6 -1.1 -0.3
stress Doxycycline hyclate 0.0002 mg/ml -0.8 -0.2 -0.7 -0.3 +0.7
temperature Glucose defined 30C timecourse1 timepoint 2 +0.2 +0.1 -1.4 -0.1 +0.5
temperature LB 30C timecourse1 timepoint 3 +0.4 +0.6 -0.5 +0.1 -0.9
carbon source L-tyrosine (C) -0.4 +0.7 -0.2 +0.4 -0.7
stress Lactate-nitrate; anaerobic; cobalt stress sample1 +0.1 -0.5 +1.0 -0.1 -0.6
temperature LB 30C timecourse1 timepoint 2 +0.4 -0.2 -0.9 +0.3 +0.4
stress methylglyoxal 0.0016 vol% -0.2 -0.2 +1.2 -0.3 -0.4
stress Spectinomycin 0.00625 mg/ml +0.2 +0.0 +1.0 +0.2 -1.2
stress Benzalkonium Chloride 0.002 mg/ml -0.1 +0.3 +1.1 -0.6 -0.2
carbon source L-Leucine (C) +0.2 +0.1 +1.0 +0.0 -0.8
stress Lactate-nitrate; anaerobic; nickel stress sample3 +0.4 -0.3 +1.0 -0.0 -0.4
stress Spectinomycin 0.00625 mg/ml +0.2 +0.2 +1.2 +0.3 -1.0
temperature LB 26C sample1 +0.4 +0.7 -0.6 -0.1 +0.4
vitamin No vitamins t2 -0.2 -0.3 +0.3 -0.1 +1.3
stress Def Neomycin 0.0008 mg/ml -0.1 +0.5 +1.5 -0.3 -0.3
stress Cephalothin 0.04 mg/ml +0.2 +0.7 -0.5 +0.3 +0.6
stress Chlorate 75 mM -0.4 -0.1 +0.7 +0.4 +0.8
radiation Ionizing radiation, 319.06 Gy, -0.0 +0.3 +0.6 -0.2 +1.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -0.2 +0.1 +1.9 +0.0 -0.1
lb LB -0.1 +0.5 +1.4 -0.1 +0.2
stress Lomefloxacin 0.0001 mM -0.3 +0.5 +1.7 -0.1 +0.4
RCH2 grown on a colony of 8R2A -0.1 +0.1 +1.1 -0.1 +1.4
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