Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2390 and Psest_2391 are separated by 85 nucleotidesPsest_2391 and Psest_2392 are separated by 173 nucleotidesPsest_2392 and Psest_2393 are separated by 36 nucleotidesPsest_2393 and Psest_2394 are separated by 79 nucleotides Psest_2390: Psest_2390 - hypothetical protein, at 2,541,821 to 2,542,348 _2390 Psest_2391: Psest_2391 - PAS domain S-box, at 2,542,434 to 2,542,880 _2391 Psest_2392: Psest_2392 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 2,543,054 to 2,545,714 _2392 Psest_2393: Psest_2393 - ferrochelatase, at 2,545,751 to 2,546,776 _2393 Psest_2394: Psest_2394 - TIGR01777 family protein, at 2,546,856 to 2,547,758 _2394
Group Condition Psest_2390 Psest_2391 Psest_2392 Psest_2393 Psest_2394
nitrogen source L-Isoleucine (N) -1.2 -0.9 -0.4 N.D. -0.6
nitrogen source nitrite (N) -1.2 -1.2 -0.6 N.D. +0.2
stress Def 2-Furfuraldehyde 0.032 vol% -0.4 -1.7 -0.8 N.D. +0.5
stress Def Benzalkonium Chloride 0.002 mg/ml -0.6 -0.8 -0.5 N.D. -0.4
anaerobic nitrate reduction - anaerobic -0.5 -0.6 -0.3 N.D. -0.4
stress Def Phosphomycin 0.125 mg/ml -0.5 -0.4 -0.0 N.D. -0.6
stress nitrate 250 mM -0.0 -1.0 -0.5 N.D. +0.2
radiation Ionizing radiation, 319.06 Gy, +0.0 -0.4 +0.0 N.D. -0.9
carbon source L-tyrosine (C) +0.1 -0.5 -0.4 N.D. -0.3
stress Cephalothin 0.04 mg/ml -0.6 -0.9 +0.1 N.D. +0.4
stress Dimethyl Sulfoxide 5 vol% -0.1 -0.4 +0.2 N.D. -0.7
stress Def Cephalothin 0.08 mg/ml -1.1 -0.2 -0.1 N.D. +0.4
stress Def Carbenicillin 0.008 mg/ml +0.3 -0.9 -0.4 N.D. +0.1
carbon source butyrate (C) -0.4 -0.8 -0.0 N.D. +0.3
stress Vancomycin 0.016 mg/ml +0.4 -0.5 +0.2 N.D. -0.5
stress Nickel (II) chloride 0.8 mM +0.2 +0.5 +0.1 N.D. -1.1
RCH2 grown on a colony of Serratia -0.4 +0.9 -0.7 N.D. -0.1
stress Fusidic 0.016 mg/ml -0.3 +0.5 +0.2 N.D. -0.5
stress Spectinomycin 0.00625 mg/ml -0.1 +0.8 -0.3 N.D. -0.5
stress Benzethonium chloride 0.01 mM +0.4 +0.3 -0.2 N.D. -0.5
temperature LB 30C timecourse2 timepoint 2 +0.4 -1.0 +0.3 N.D. +0.6
stress nitrite 2.5 mM +0.0 +0.8 -0.2 N.D. -0.3
temperature LB 30C timecourse1 timepoint 3 -0.3 -0.2 +0.3 N.D. +0.6
stress 2-Furfuraldehyde 0.05 vol% +0.3 +0.6 +0.0 N.D. -0.6
stress perchlorate 25 mM +0.7 +0.3 +0.1 N.D. -0.2
stress 2-Furfuraldehyde 0.05 vol% +0.0 +0.5 +0.4 N.D. +0.5
nitrogen source L-Proline (N) +0.6 +0.2 +0.2 N.D. +0.3
stress Def Neomycin 0.0008 mg/ml -0.1 +0.9 +0.4 N.D. +0.3
nitrogen source L-Glutamine (N) +0.7 +0.4 +0.3 N.D. +0.4
stress Def Carbenicillin 0.02 mg/ml +0.3 +0.2 +0.4 N.D. +1.1
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