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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2390 and Psest_2391 are separated by 85 nucleotides
Psest_2391 and Psest_2392 are separated by 173 nucleotides
Psest_2392 and Psest_2393 are separated by 36 nucleotides
Psest_2393 and Psest_2394 are separated by 79 nucleotides
Psest_2390: Psest_2390 - hypothetical protein, at 2,541,821 to 2,542,348
_2390
Psest_2391: Psest_2391 - PAS domain S-box, at 2,542,434 to 2,542,880
_2391
Psest_2392: Psest_2392 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 2,543,054 to 2,545,714
_2392
Psest_2393: Psest_2393 - ferrochelatase, at 2,545,751 to 2,546,776
_2393
Psest_2394: Psest_2394 - TIGR01777 family protein, at 2,546,856 to 2,547,758
_2394
Group
Condition
Psest
_2390
Psest
_2391
Psest
_2392
Psest
_2393
Psest
_2394
nitrogen source
L-Isoleucine (N)
-1.2
-0.9
-0.4
N.D.
-0.6
nitrogen source
nitrite (N)
-1.2
-1.2
-0.6
N.D.
+0.2
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.4
-1.7
-0.8
N.D.
+0.5
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.6
-0.8
-0.5
N.D.
-0.4
anaerobic
nitrate reduction - anaerobic
-0.5
-0.6
-0.3
N.D.
-0.4
stress
Def Phosphomycin 0.125 mg/ml
-0.5
-0.4
-0.0
N.D.
-0.6
stress
nitrate 250 mM
-0.0
-1.0
-0.5
N.D.
+0.2
radiation
Ionizing radiation, 319.06 Gy,
+0.0
-0.4
+0.0
N.D.
-0.9
carbon source
L-tyrosine (C)
+0.1
-0.5
-0.4
N.D.
-0.3
stress
Cephalothin 0.04 mg/ml
-0.6
-0.9
+0.1
N.D.
+0.4
stress
Dimethyl Sulfoxide 5 vol%
-0.1
-0.4
+0.2
N.D.
-0.7
stress
Def Cephalothin 0.08 mg/ml
-1.1
-0.2
-0.1
N.D.
+0.4
stress
Def Carbenicillin 0.008 mg/ml
+0.3
-0.9
-0.4
N.D.
+0.1
carbon source
butyrate (C)
-0.4
-0.8
-0.0
N.D.
+0.3
stress
Vancomycin 0.016 mg/ml
+0.4
-0.5
+0.2
N.D.
-0.5
stress
Nickel (II) chloride 0.8 mM
+0.2
+0.5
+0.1
N.D.
-1.1
RCH2 grown on a colony of Serratia
-0.4
+0.9
-0.7
N.D.
-0.1
stress
Fusidic 0.016 mg/ml
-0.3
+0.5
+0.2
N.D.
-0.5
stress
Spectinomycin 0.00625 mg/ml
-0.1
+0.8
-0.3
N.D.
-0.5
stress
Benzethonium chloride 0.01 mM
+0.4
+0.3
-0.2
N.D.
-0.5
temperature
LB 30C timecourse2 timepoint 2
+0.4
-1.0
+0.3
N.D.
+0.6
stress
nitrite 2.5 mM
+0.0
+0.8
-0.2
N.D.
-0.3
temperature
LB 30C timecourse1 timepoint 3
-0.3
-0.2
+0.3
N.D.
+0.6
stress
2-Furfuraldehyde 0.05 vol%
+0.3
+0.6
+0.0
N.D.
-0.6
stress
perchlorate 25 mM
+0.7
+0.3
+0.1
N.D.
-0.2
stress
2-Furfuraldehyde 0.05 vol%
+0.0
+0.5
+0.4
N.D.
+0.5
nitrogen source
L-Proline (N)
+0.6
+0.2
+0.2
N.D.
+0.3
stress
Def Neomycin 0.0008 mg/ml
-0.1
+0.9
+0.4
N.D.
+0.3
nitrogen source
L-Glutamine (N)
+0.7
+0.4
+0.3
N.D.
+0.4
stress
Def Carbenicillin 0.02 mg/ml
+0.3
+0.2
+0.4
N.D.
+1.1
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