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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_2381 and Psest_2382 are separated by 270 nucleotides
Psest_2382 and Psest_2383 are separated by 34 nucleotides
Psest_2383 and Psest_2384 are separated by 93 nucleotides
Psest_2384 and Psest_2385 overlap by 4 nucleotides
Psest_2381: Psest_2381 - hypothetical protein, at 2,533,067 to 2,534,272
_2381
Psest_2382: Psest_2382 - coenzyme PQQ biosynthesis probable peptidase PqqF, at 2,534,543 to 2,537,083
_2382
Psest_2383: Psest_2383 - Predicted transcriptional regulators, at 2,537,118 to 2,538,065
_2383
Psest_2384: Psest_2384 - Uncharacterized protein conserved in bacteria, at 2,538,159 to 2,538,608
_2384
Psest_2385: Psest_2385 - hypothetical protein, at 2,538,605 to 2,538,919
_2385
Group
Condition
Psest
_2381
Psest
_2382
Psest
_2383
Psest
_2384
Psest
_2385
carbon source
D-Fructose (C)
-0.2
-1.9
-1.5
+0.1
N.D.
carbon source
succinate (C)
-0.2
-2.5
-0.1
-0.6
N.D.
carbon source
propionate (C)
-0.0
-0.5
-2.2
-0.1
N.D.
RCH2 grown on a colony of N2F3
+0.1
-0.1
-1.3
-1.3
N.D.
carbon source
D-Fructose (C)
+0.0
-1.5
-1.0
+0.1
N.D.
carbon source
propionate (C)
+0.6
-0.2
-2.4
-0.1
N.D.
stress
Thallium(I) acetate 0.08 mg/ml
+0.2
-0.4
-0.6
-1.4
N.D.
carbon source
succinate (C)
+0.2
-2.3
+0.1
-0.0
N.D.
RCH2 grown on a colony of N2F3
-0.4
+0.4
-1.2
-0.5
N.D.
carbon source
Ethanol (C)
+1.5
-3.3
+0.2
+0.4
N.D.
carbon source
Ethanol (C)
+1.5
-3.0
+0.4
+0.6
N.D.
nitrogen source
L-Isoleucine (N)
-0.1
-0.6
+1.5
-1.2
N.D.
stress
Def Benzethonium chloride 0.008 mM
+0.5
+0.5
-1.4
+0.1
N.D.
stress
nitrate 250 mM
-0.1
+0.5
-1.3
+0.6
N.D.
RCH2 grown on a colony of N2C3
-0.1
-0.7
-0.7
+1.5
N.D.
stress
Paraquat dichloride 0.015 mg/ml
-0.1
-0.5
+1.7
-1.0
N.D.
nitrogen source
L-Valine (N)
-0.1
-0.9
+1.4
+0.1
N.D.
nitrogen source
L-Alanine (N)
+0.0
-0.6
+1.6
-0.4
N.D.
carbon source
L-tyrosine (C)
+0.1
-0.4
+2.3
-0.8
N.D.
stress
Phosphomycin 0.012 mg/ml
-0.3
+0.1
+2.0
-0.1
N.D.
stress
Def Carbenicillin 0.008 mg/ml
+0.0
+0.3
+2.1
-0.6
N.D.
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.7
+1.1
-1.1
+0.2
N.D.
stress
Fusidic 0.016 mg/ml
+0.2
+0.6
+1.5
-0.4
N.D.
stress
Chlorate 75 mM
-0.2
-0.1
+0.8
+1.7
N.D.
carbon source
butyrate (C)
+0.1
+0.0
+2.3
-0.0
N.D.
temperature
LB 30C timecourse1 timepoint 3
-0.0
-0.2
+2.1
+0.5
N.D.
nitrogen source
nitrite (N)
+0.2
-0.3
+2.7
+0.0
N.D.
carbon source
L-tyrosine (C)
-0.1
-0.5
+2.8
+0.4
N.D.
nitrogen source
nitrite (N)
-0.1
-0.7
+3.3
+0.1
N.D.
stress
Cephalothin 0.04 mg/ml
+0.3
+0.6
+2.2
+0.6
N.D.
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