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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2330 and Psest_2331 are separated by 261 nucleotides
Psest_2331 and Psest_2332 are separated by 30 nucleotides
Psest_2332 and Psest_2333 are separated by 363 nucleotides
Psest_2333 and Psest_2334 are separated by 62 nucleotides
Psest_2330: Psest_2330 - 2-dehydropantoate 2-reductase, at 2,484,400 to 2,485,356
_2330
Psest_2331: Psest_2331 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,485,618 to 2,486,694
_2331
Psest_2332: Psest_2332 - Predicted acetyltransferase, at 2,486,725 to 2,487,018
_2332
Psest_2333: Psest_2333 - Protein of unknown function (DUF3359)., at 2,487,382 to 2,487,663
_2333
Psest_2334: Psest_2334 - Uncharacterized protein conserved in bacteria, at 2,487,726 to 2,488,691
_2334
Group
Condition
Psest
_2330
Psest
_2331
Psest
_2332
Psest
_2333
Psest
_2334
stress
Spectinomycin 0.00625 mg/ml
-0.2
-0.2
-1.2
-5.9
-0.4
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.5
-0.5
-1.2
-2.5
-2.4
temperature
Glucose defined 30C timecourse1 timepoint 3
-0.4
-1.0
-0.1
-4.9
-0.1
stress
Choline Lysine 20 mM
-0.1
-1.9
-0.5
-2.9
-0.9
stress
Def Doxycycline hyclate 0.0006 mg/ml
-0.6
-0.3
-1.0
-2.7
-1.6
stress
Bacitracin 0.25 mg/ml
-0.1
+0.0
-0.5
-3.0
-2.7
carbon source
D-Maltose (C)
+0.0
-1.3
+0.3
-5.4
+0.4
nitrogen source
Adenine (N)
+0.0
-0.9
-0.2
-4.4
-0.3
stress
Def Polymyxin B sulfate 0.0001 mg/ml
-0.3
-0.5
-0.3
-3.9
-0.7
stress
Def Benzethonium chloride 0.008 mM
-0.2
+0.4
-1.1
-3.9
-0.7
stress
Fusidic 0.016 mg/ml
-0.0
-0.3
-0.3
-3.9
-0.9
stress
Phosphomycin 0.012 mg/ml
+0.1
-0.2
-0.0
-5.1
-0.2
carbon source
Tween 20 (C)
-0.1
-0.4
-0.3
-4.2
-0.4
nitrogen source
Urea (N)
-0.1
-0.8
-0.0
-4.1
-0.2
carbon source
D,L-Lactate (C)
-0.1
-1.0
-0.1
-3.7
-0.2
nitrogen source
Cytosine (N)
+0.0
-0.2
+0.2
-5.4
+0.3
stress
Chloride 200 mM
-0.7
-0.6
-1.1
-1.7
-1.0
RCH2 grown on a colony of N2F3
+0.2
-0.2
-0.6
-3.5
-0.7
carbon source
RCH2 defined media
-0.0
+0.1
+0.3
-5.3
+0.2
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.2
-0.7
-0.2
-3.7
-0.5
carbon source
D-Maltose (C)
+0.0
-1.5
+0.2
-3.5
+0.2
carbon source
D-Maltose (C)
+0.0
-1.2
+0.3
-4.0
+0.4
stress
Nalidixic 0.00390625 mg/ml
+0.6
+0.4
-0.6
-3.6
-1.0
nitrogen source
Cytosine (N)
-0.0
-0.3
+0.1
-4.3
+0.3
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.0
+1.0
-0.3
-2.8
-1.2
carbon source
propionate (C)
-0.6
+0.9
-0.5
-2.6
-0.4
vitamin
With vitamins t2
-0.3
-0.9
-0.1
+3.3
-0.9
nutrient
L-tyrosine
-0.2
-0.5
-0.6
+5.6
-0.7
nutrient
L-tyrosine
-0.0
-0.1
-0.2
+4.7
-0.7
stress
Def Vancomycin 0.016 mg/ml
+0.8
+1.3
+1.6
+1.2
+1.2
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