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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2270 and Psest_2271 overlap by 29 nucleotides
Psest_2271 and Psest_2272 are separated by 93 nucleotides
Psest_2272 and Psest_2273 are separated by 86 nucleotides
Psest_2273 and Psest_2274 are separated by 46 nucleotides
Psest_2270: Psest_2270 - coenzyme PQQ biosynthesis protein E, at 2,420,309 to 2,421,463
_2270
Psest_2271: Psest_2271 - coenzyme PQQ biosynthesis protein PqqD, at 2,421,435 to 2,421,713
_2271
Psest_2272: Psest_2272 - coenzyme PQQ biosynthesis protein C, at 2,421,807 to 2,422,559
_2272
Psest_2273: Psest_2273 - coenzyme PQQ biosynthesis protein B, at 2,422,646 to 2,423,557
_2273
Psest_2274: Psest_2274 - coenzyme PQQ biosynthesis protein A, at 2,423,604 to 2,423,675
_2274
Group
Condition
Psest
_2270
Psest
_2271
Psest
_2272
Psest
_2273
Psest
_2274
carbon source
Ethanol (C)
-2.0
-1.5
-3.7
-3.4
-2.7
carbon source
Ethanol (C)
-2.4
-2.4
-3.5
-2.7
-1.8
stress
Chlorate 75 mM
-0.7
+0.4
-0.2
-1.6
-1.4
stress
Def Cephalothin 0.04 mg/ml
-0.4
-0.8
-0.2
-0.2
-0.4
stress
Nalidixic 0.00390625 mg/ml
+0.4
+0.1
+0.0
-0.5
-1.7
stress
nitrite 2.5 mM
-0.0
-0.7
+0.4
-0.1
-1.0
lb
LB
+0.2
-1.3
+0.2
-0.2
-0.4
stress
nitrite 2.5 mM
-0.3
-0.6
+0.4
-0.2
-0.8
carbon source
D-Gluconic Acid (C)
+0.2
-1.2
-0.1
-0.3
+0.1
nutrient
Min media with glucose
-0.3
-0.8
-0.1
-0.4
+0.5
stress
Spectinomycin 0.00625 mg/ml
-0.5
+0.5
-0.1
+0.3
-0.9
stress
Cobalt chloride 0.07 mM
-0.3
+0.9
-0.2
-0.1
-0.9
RCH2 grown on a colony of N2F3
-0.1
-0.6
+0.6
-0.7
+0.2
anaerobic
Nitrate/ lactate media with Nitrate 250mM
-0.0
+0.8
+0.2
-0.4
-1.0
RCH2 grown on a colony of ecoli
-0.2
-0.4
-0.4
+0.4
+0.6
stress
nitrate 200 mM
-0.2
-1.1
+0.3
+0.5
+0.6
stress
Lactate-nitrate; anaerobic; cobalt stress sample1
+0.1
+1.0
-0.0
-0.4
-0.5
RCH2 grown on a colony of N2A2
+0.4
-1.0
-0.1
+0.4
+0.6
stress
Benzethonium chloride 0.0125 mM
+0.7
+0.2
-0.2
+0.6
-0.4
stress
Lactate-nitrate; anaerobic; dichromate stress sample1
-0.1
+0.9
+0.0
-0.6
+0.6
carbon source
L-tyrosine (C)
-0.1
+1.5
+0.1
-0.4
-0.1
stress
Cisplatin 0.0016 mg/ml
+0.6
+0.8
+0.1
-0.4
-0.2
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.4
-0.5
+0.5
+0.1
+0.6
stress
Def Chlorate 20 mM
+0.5
+0.4
+0.3
+0.5
+0.4
stress
Def Carbenicillin 0.008 mg/ml
+0.1
+0.5
+0.3
+0.5
+0.9
anaerobic
Nitrate/ lactate media with Nitrate 50mM
+0.3
+1.3
+0.4
+0.1
+0.1
stress
Furfuryl Alcohol 0.05 vol%
+0.7
+0.7
+0.2
+0.3
+0.5
stress
Cephalothin 0.04 mg/ml
+0.2
+0.9
+0.2
+0.4
+1.0
stress
Def Benzethonium chloride 0.008 mM
+0.5
+0.7
+0.7
+0.8
+1.3
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.4
+1.1
+1.4
+1.9
+1.7
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