Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2266 and Psest_2267 are separated by 50 nucleotidesPsest_2267 and Psest_2268 overlap by 17 nucleotidesPsest_2268 and Psest_2269 are separated by 107 nucleotidesPsest_2269 and Psest_2270 overlap by 4 nucleotides Psest_2266: Psest_2266 - hypothetical protein, at 2,415,052 to 2,415,396 _2266 Psest_2267: Psest_2267 - PAS domain S-box, at 2,415,447 to 2,417,144 _2267 Psest_2268: Psest_2268 - Alcohol dehydrogenase, class IV, at 2,417,128 to 2,418,291 _2268 Psest_2269: Psest_2269 - Dipeptidyl aminopeptidases/acylaminoacyl-peptidases, at 2,418,399 to 2,420,312 _2269 Psest_2270: Psest_2270 - coenzyme PQQ biosynthesis protein E, at 2,420,309 to 2,421,463 _2270
Group Condition Psest_2266 Psest_2267 Psest_2268 Psest_2269 Psest_2270
carbon source Ethanol (C) +0.4 -1.5 -1.3 -0.3 -2.4
carbon source Ethanol (C) -0.1 -1.4 -1.0 -0.0 -2.0
stress Lactate-nitrate; anaerobic; copper stress sample1 -2.0 -0.1 -1.1 +0.0 +0.2
RCH2 grown on a colony of Serratia -1.6 -0.4 +0.2 -0.2 -0.2
stress Lactate-nitrate; anaerobic; copper stress sample3 -1.6 -0.2 -0.6 +0.1 -0.0
stress Lactate-nitrate; anaerobic sample2 -1.1 -0.0 -0.7 +0.3 -0.2
stress Def Neomycin 0.0008 mg/ml -0.7 -0.0 -0.9 -0.4 +0.3
RCH2 grown on a colony of 8R2A -1.3 +0.1 -0.3 -0.1 +0.3
stress Lactate-nitrate; anaerobic; uranyl acetate stress sample2 -0.3 +0.2 -0.9 +0.2 -0.4
vitamin No vitamins t1 -0.6 +0.1 -1.0 -0.2 +0.5
stress Chlorate 75 mM +0.7 -0.8 +0.4 -0.7 -0.7
nitrogen source nitrite (N) -0.9 +0.4 -0.7 +0.2 +0.0
stress Fusidic 0.016 mg/ml -0.8 +0.4 +0.3 -0.8 +0.1
stress Benzethonium chloride 0.01 mM -1.2 +0.3 +0.3 -0.3 +0.1
anaerobic Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten +0.6 +0.1 -1.0 -0.1 -0.2
stress Bacitracin 0.25 mg/ml -1.2 -0.1 +0.7 -0.3 +0.4
stress nitrate 200 mM +0.4 +0.6 -0.3 -0.7 -0.1
carbon source propionate (C) +0.1 +0.4 -1.1 +0.5 +0.2
stress Fusidic 0.016 mg/ml -0.2 +0.5 +0.7 -0.6 +0.3
stress Def Doxycycline hyclate 0.0002 mg/ml -0.7 +0.5 +0.7 +0.1 +0.2
stress Benzethonium chloride 0.0125 mM -0.7 +0.6 +0.2 -0.1 +0.7
RCH2 grown on a colony of N2A2 +0.9 +0.2 -0.7 +0.1 +0.4
carbon source propionate (C) -0.8 -0.3 +2.1 +0.4 -0.0
carbon source L-tyrosine (C) +0.5 +0.7 +0.5 -0.3 +0.3
stress Def Vancomycin 0.016 mg/ml -0.1 +1.0 +0.7 -0.1 +0.2
stress Carbenicillin 0.008 mg/ml +0.6 +0.4 +0.6 +0.3 +0.3
carbon source L-Proline (C) +0.1 +1.2 +1.3 -0.3 +0.1
stress Def Chlorate 20 mM +0.4 +0.5 +0.8 +0.2 +0.5
stress Def Nalidixic 0.001 mg/ml -0.1 +1.3 +1.4 -0.2 +0.1
stress Def Benzalkonium Chloride 0.002 mg/ml +0.4 +2.9 +2.9 +0.4 +1.4
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