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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2250 and Psest_2251 are separated by 48 nucleotides
Psest_2251 and Psest_2252 are separated by 91 nucleotides
Psest_2252 and Psest_2253 are separated by 8 nucleotides
Psest_2253 and Psest_2254 are separated by 112 nucleotides
Psest_2250: Psest_2250 - Predicted flavoprotein involved in K+ transport, at 2,399,231 to 2,400,313
_2250
Psest_2251: Psest_2251 - arsenical-resistance protein, at 2,400,362 to 2,401,441
_2251
Psest_2252: Psest_2252 - Predicted permeases, at 2,401,533 to 2,402,909
_2252
Psest_2253: Psest_2253 - small redox-active disulfide protein 2, at 2,402,918 to 2,403,148
_2253
Psest_2254: Psest_2254 - hypothetical protein, at 2,403,261 to 2,403,455
_2254
Group
Condition
Psest
_2250
Psest
_2251
Psest
_2252
Psest
_2253
Psest
_2254
stress
Lactate-nitrate; anaerobic; copper stress sample1
-0.3
-0.1
-0.2
-1.9
N.D.
stress
Nalidixic 0.00390625 mg/ml
-0.6
+0.0
+0.0
-1.7
N.D.
stress
Chlorate 75 mM
+0.0
-0.2
+0.1
-1.9
N.D.
RCH2 grown on a colony of N2F3
+0.1
-0.4
-0.5
-1.0
N.D.
carbon source
Glycerol (C)
-0.1
-0.1
-0.2
-1.4
N.D.
stress
Cobalt chloride 0.07 mM
-0.3
+0.1
+0.2
-1.6
N.D.
stress
Choline Lysine 20 mM
+0.1
-0.0
+0.0
-1.7
N.D.
nitrogen source
L-Glutamic (N)
+0.5
-0.3
-0.3
-1.5
N.D.
carbon source
L-tyrosine (C)
+0.1
-0.0
+0.4
-2.0
N.D.
stress
Lactate-nitrate; anaerobic; dichromate stress sample2
-0.2
+0.0
-0.3
-1.1
N.D.
stress
Carbenicillin 0.008 mg/ml
+0.5
+0.2
-0.1
-2.0
N.D.
vitamin
No vitamins t1
+0.3
+0.0
-0.3
-1.2
N.D.
stress
Thallium(I) acetate 0.09 mg/ml
+0.3
+0.1
-0.2
-1.4
N.D.
stress
Vanillin 2 mM
-0.4
-0.0
+0.3
-0.9
N.D.
RCH2 grown on a colony of ecoli
+0.0
+0.5
-0.2
-1.1
N.D.
stress
Thallium(I) acetate 0.09 mg/ml
+0.4
-0.0
-0.0
-1.2
N.D.
stress
Nickel (II) chloride 0.9 mM
+0.4
-0.1
-0.1
-1.0
N.D.
stress
Def Neomycin 0.0008 mg/ml
-0.2
+0.2
+0.2
-0.9
N.D.
RCH2 grown on a colony of N2F3
-0.9
-0.3
-0.1
+0.6
N.D.
lb
LB
+0.4
-0.1
+0.2
-1.2
N.D.
stress
A22 0.005 mg/ml
-0.5
-0.3
-0.2
+0.6
N.D.
stress
Choline chloride 90 mM
+0.4
+0.3
+0.4
-1.2
N.D.
stress
D-Cycloserine 0.032 mg/ml
-0.4
+0.2
-0.5
+0.8
N.D.
stress
Fusidic 0.016 mg/ml
+0.9
+0.0
-0.1
-0.5
N.D.
RCH2 grown on a colony of N2A2
+0.1
+0.8
+0.3
-0.5
N.D.
stress
Cephalothin 0.04 mg/ml
-0.3
-0.1
+0.1
+1.1
N.D.
RCH2 grown on a colony of Serratia
+0.2
+0.3
-0.3
+0.9
N.D.
nitrogen source
Glycine (N)
+0.2
+0.3
-0.2
+1.0
N.D.
stress
Nalidixic 0.00390625 mg/ml
+0.4
+0.4
-0.4
+0.9
N.D.
carbon source
propionate (C)
+0.6
+0.3
+0.0
+0.8
N.D.
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