Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2219 and Psest_2220 overlap by 1 nucleotidesPsest_2220 and Psest_2222 are separated by 1308 nucleotidesPsest_2222 and Psest_2223 are separated by 95 nucleotidesPsest_2223 and Psest_2225 are separated by 532 nucleotides Psest_2219: Psest_2219 - pyruvate dehydrogenase E1 component, alpha subunit, at 2,368,139 to 2,369,131 _2219 Psest_2220: Psest_2220 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 2,369,131 to 2,370,888 _2220 Psest_2222: Psest_2222 - ribose-phosphate pyrophosphokinase, at 2,372,197 to 2,373,150 _2222 Psest_2223: Psest_2223 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 2,373,246 to 2,373,995 _2223 Psest_2225: Psest_2225 - Diacylglycerol kinase, at 2,374,528 to 2,374,914 _2225
Group Condition Psest_2219 Psest_2220 Psest_2222 Psest_2223 Psest_2225
stress Def 2-Furfuraldehyde 0.032 vol% +0.2 +0.1 +0.2 -0.3 -2.3
stress Lactate-nitrate; anaerobic; cadmium stress sample3 -0.1 -0.1 -0.1 +0.1 -1.7
stress Lactate-nitrate; anaerobic; uranyl acetate stress sample1 -0.1 -0.1 -0.4 +0.1 -1.4
stress Lactate-nitrate; anaerobic; copper stress sample1 -0.0 +0.2 -0.2 -0.3 -1.4
stress 1-ethyl-3-methylimidazolium acetate 40 mM -0.4 -0.0 -0.4 -0.4 -0.5
stress Def Phosphomycin 0.125 mg/ml -0.5 -0.2 -0.4 -0.2 -0.4
stress Lactate-nitrate; anaerobic sample2 +0.1 -0.3 -0.3 +0.3 -1.5
vitamin No vitamins t1 -0.2 -0.2 -0.5 +0.1 -0.8
vitamin With vitamins t1 +0.2 +0.1 -0.1 +0.3 -2.1
stress Cisplatin 0.003 mg/ml +0.1 -0.0 -0.5 -0.4 -0.7
RCH2 grown on a colony of N2F3 -0.4 +0.2 -0.9 +0.1 -0.3
metal limitation Lactate-nitrite with YE; anaerobic; sample2 +0.1 +0.1 -0.2 -0.1 -1.2
stress Lactate-nitrate; anaerobic; uranyl acetate stress sample3 +0.0 -0.1 +0.2 -0.2 -1.2
stress Lactate-nitrate; anaerobic; dichromate stress sample3 -0.1 +0.0 +0.2 -0.1 -1.2
vitamin With vitamins t2 +0.1 +0.2 -0.2 +0.1 -1.4
stress Def Fusidic 0.064 mg/ml +0.3 +0.2 -0.2 +0.0 -1.2
stress 2-Furfuraldehyde 0.05 vol% +0.1 +0.2 -0.4 +0.1 -0.9
nitrogen source L-Glutamic (N) -0.2 +0.1 +0.3 -0.1 -1.1
stress Dimethyl Sulfoxide 5 vol% +0.2 +0.2 -0.1 +0.1 -1.2
stress nitrate 200 mM -0.3 +0.2 -0.7 -0.2 +0.3
lb LB -0.5 -0.3 -0.3 +0.1 +0.8
anaerobic Nitrate/ lactate media with Nitrate 250mM +0.3 +0.4 -0.2 +0.1 -0.7
stress nitrate 200 mM +0.6 -0.1 +0.4 -0.2 -0.7
nitrogen source Parabanic Acid (N) -0.3 +0.4 +0.4 +0.2 -0.5
stress methylglyoxal 0.0016 vol% -0.5 -0.0 -0.0 -0.2 +1.2
stress nitrate 250 mM +0.7 +0.1 +1.0 -0.1 -1.3
RCH2 grown on a colony of N2A2 -0.4 +0.0 +0.3 -0.4 +1.0
stress Nalidixic 0.00390625 mg/ml +0.4 +0.2 +0.5 +0.9 -1.2
stress Paraquat dichloride 0.015 mg/ml +0.1 +0.1 +0.5 -0.4 +1.4
stress Fusidic 0.016 mg/ml +0.3 +0.4 +0.6 +0.2 +0.9
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