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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_2219 and Psest_2220 overlap by 1 nucleotides
Psest_2220 and Psest_2222 are separated by 1308 nucleotides
Psest_2222 and Psest_2223 are separated by 95 nucleotides
Psest_2223 and Psest_2225 are separated by 532 nucleotides
Psest_2219: Psest_2219 - pyruvate dehydrogenase E1 component, alpha subunit, at 2,368,139 to 2,369,131
_2219
Psest_2220: Psest_2220 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 2,369,131 to 2,370,888
_2220
Psest_2222: Psest_2222 - ribose-phosphate pyrophosphokinase, at 2,372,197 to 2,373,150
_2222
Psest_2223: Psest_2223 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 2,373,246 to 2,373,995
_2223
Psest_2225: Psest_2225 - Diacylglycerol kinase, at 2,374,528 to 2,374,914
_2225
Group
Condition
Psest
_2219
Psest
_2220
Psest
_2222
Psest
_2223
Psest
_2225
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.2
+0.1
+0.2
-0.3
-2.3
stress
Lactate-nitrate; anaerobic; cadmium stress sample3
-0.1
-0.1
-0.1
+0.1
-1.7
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample1
-0.1
-0.1
-0.4
+0.1
-1.4
stress
Lactate-nitrate; anaerobic; copper stress sample1
-0.0
+0.2
-0.2
-0.3
-1.4
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.4
-0.0
-0.4
-0.4
-0.5
stress
Def Phosphomycin 0.125 mg/ml
-0.5
-0.2
-0.4
-0.2
-0.4
stress
Lactate-nitrate; anaerobic sample2
+0.1
-0.3
-0.3
+0.3
-1.5
vitamin
No vitamins t1
-0.2
-0.2
-0.5
+0.1
-0.8
vitamin
With vitamins t1
+0.2
+0.1
-0.1
+0.3
-2.1
stress
Cisplatin 0.003 mg/ml
+0.1
-0.0
-0.5
-0.4
-0.7
RCH2 grown on a colony of N2F3
-0.4
+0.2
-0.9
+0.1
-0.3
metal limitation
Lactate-nitrite with YE; anaerobic; sample2
+0.1
+0.1
-0.2
-0.1
-1.2
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample3
+0.0
-0.1
+0.2
-0.2
-1.2
stress
Lactate-nitrate; anaerobic; dichromate stress sample3
-0.1
+0.0
+0.2
-0.1
-1.2
vitamin
With vitamins t2
+0.1
+0.2
-0.2
+0.1
-1.4
stress
Def Fusidic 0.064 mg/ml
+0.3
+0.2
-0.2
+0.0
-1.2
stress
2-Furfuraldehyde 0.05 vol%
+0.1
+0.2
-0.4
+0.1
-0.9
nitrogen source
L-Glutamic (N)
-0.2
+0.1
+0.3
-0.1
-1.1
stress
Dimethyl Sulfoxide 5 vol%
+0.2
+0.2
-0.1
+0.1
-1.2
stress
nitrate 200 mM
-0.3
+0.2
-0.7
-0.2
+0.3
lb
LB
-0.5
-0.3
-0.3
+0.1
+0.8
anaerobic
Nitrate/ lactate media with Nitrate 250mM
+0.3
+0.4
-0.2
+0.1
-0.7
stress
nitrate 200 mM
+0.6
-0.1
+0.4
-0.2
-0.7
nitrogen source
Parabanic Acid (N)
-0.3
+0.4
+0.4
+0.2
-0.5
stress
methylglyoxal 0.0016 vol%
-0.5
-0.0
-0.0
-0.2
+1.2
stress
nitrate 250 mM
+0.7
+0.1
+1.0
-0.1
-1.3
RCH2 grown on a colony of N2A2
-0.4
+0.0
+0.3
-0.4
+1.0
stress
Nalidixic 0.00390625 mg/ml
+0.4
+0.2
+0.5
+0.9
-1.2
stress
Paraquat dichloride 0.015 mg/ml
+0.1
+0.1
+0.5
-0.4
+1.4
stress
Fusidic 0.016 mg/ml
+0.3
+0.4
+0.6
+0.2
+0.9
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