Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2184 and Psest_2185 overlap by 4 nucleotidesPsest_2185 and Psest_2186 are separated by 3 nucleotidesPsest_2186 and Psest_2187 overlap by 4 nucleotidesPsest_2187 and Psest_2188 are separated by 171 nucleotides Psest_2184: Psest_2184 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,340,992 to 2,342,464 _2184 Psest_2185: Psest_2185 - RND family efflux transporter, MFP subunit, at 2,342,461 to 2,343,360 _2185 Psest_2186: Psest_2186 - Protein of unknown function (DUF1656)., at 2,343,364 to 2,343,567 _2186 Psest_2187: Psest_2187 - Predicted membrane protein, at 2,343,564 to 2,345,624 _2187 Psest_2188: Psest_2188 - AraC-type DNA-binding domain-containing proteins, at 2,345,796 to 2,346,731 _2188
Group Condition Psest_2184 Psest_2185 Psest_2186 Psest_2187 Psest_2188
stress benzoic 0.4 mg/ml -0.8 -1.1 -1.3 -1.4 -1.1
stress benzoic 0.4 mg/ml -0.7 -0.7 -0.8 -0.8 -0.9
stress Polymyxin B sulfate 0.0001 mg/ml -0.3 -0.6 -0.9 -0.7 -0.4
stress benzoic 0.4 mg/ml -0.7 -0.5 -0.4 -0.5 -0.6
stress Nalidixic 0.00390625 mg/ml +0.1 -0.5 -0.4 -0.8 -0.7
stress Choline chloride 90 mM -0.6 -0.7 -0.0 -0.5 -0.3
stress Anaerobic 500 uM Zinc chloride sample3 -0.2 -0.3 -0.4 -0.4 -0.7
metal limitation Anaerobic, no Mo, no W, sample1 -0.3 -0.2 -0.5 -0.3 -0.7
stress sodium fluoride 6.25 mM -0.2 -0.7 -0.6 -0.3 -0.1
metal limitation Anaerobic, no Mo, no W, sample2 -0.2 -0.5 -0.3 -0.2 -0.6
carbon source Anaerobic, Glucose Nitrate sample3 -0.2 -0.3 -0.4 -0.2 -0.7
stress Anaerobic 500 uM Zinc chloride sample1 -0.5 -0.1 -0.2 -0.4 -0.6
metal limitation Anaerobic, no iron sample2 -0.3 -0.2 -0.6 -0.2 -0.4
stress Nalidixic 0.00390625 mg/ml +0.1 -0.5 -0.3 -0.3 -0.7
stress nitrate 200 mM -0.5 +0.1 -0.6 -0.1 -0.7
stress Cisplatin 0.003 mg/ml -0.6 -0.8 -0.3 -0.1 +0.1
RCH2 grown on a colony of ecoli -0.3 -0.5 +0.2 -0.6 -0.4
vitamin With vitamins t1 +0.4 -0.6 -0.8 -0.1 -0.3
stress Def Chloride 400 mM -0.3 -0.6 +0.0 -0.6 +0.2
RCH2 grown on a colony of N2C3 +0.2 -0.4 +0.1 -0.6 -0.4
stress Cisplatin 0.0016 mg/ml -0.6 -0.2 +0.3 -0.2 -0.4
stress Carbenicillin 0.0065 mg/ml +0.4 -0.5 -0.5 -0.4 +0.0
RCH2 grown on a colony of N2F3 -0.3 +0.2 +0.2 +0.4 -0.8
RCH2 grown on a colony of Serratia +1.2 +0.2 -0.9 -0.4 -0.4
vitamin No vitamins t1 +0.6 -0.3 +0.4 -0.2 -0.5
stress Cephalothin 0.04 mg/ml +0.6 -0.1 +0.5 -0.3 +0.3
RCH2 grown on a colony of ecoli -0.4 +0.6 -0.1 +0.4 +0.5
stress Def Carbenicillin 0.008 mg/ml +0.7 +0.1 +0.9 -0.4 -0.0
stress Def Carbenicillin 0.02 mg/ml +0.3 +0.9 +1.1 -0.2 +0.1
nitrogen source nitrite (N) +0.4 +0.4 +1.0 +0.3 +0.1
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