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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2184 and Psest_2185 overlap by 4 nucleotides
Psest_2185 and Psest_2186 are separated by 3 nucleotides
Psest_2186 and Psest_2187 overlap by 4 nucleotides
Psest_2187 and Psest_2188 are separated by 171 nucleotides
Psest_2184: Psest_2184 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,340,992 to 2,342,464
_2184
Psest_2185: Psest_2185 - RND family efflux transporter, MFP subunit, at 2,342,461 to 2,343,360
_2185
Psest_2186: Psest_2186 - Protein of unknown function (DUF1656)., at 2,343,364 to 2,343,567
_2186
Psest_2187: Psest_2187 - Predicted membrane protein, at 2,343,564 to 2,345,624
_2187
Psest_2188: Psest_2188 - AraC-type DNA-binding domain-containing proteins, at 2,345,796 to 2,346,731
_2188
Group
Condition
Psest
_2184
Psest
_2185
Psest
_2186
Psest
_2187
Psest
_2188
stress
benzoic 0.4 mg/ml
-0.8
-1.1
-1.3
-1.4
-1.1
stress
benzoic 0.4 mg/ml
-0.7
-0.7
-0.8
-0.8
-0.9
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.3
-0.6
-0.9
-0.7
-0.4
stress
benzoic 0.4 mg/ml
-0.7
-0.5
-0.4
-0.5
-0.6
stress
Nalidixic 0.00390625 mg/ml
+0.1
-0.5
-0.4
-0.8
-0.7
stress
Choline chloride 90 mM
-0.6
-0.7
-0.0
-0.5
-0.3
stress
Anaerobic 500 uM Zinc chloride sample3
-0.2
-0.3
-0.4
-0.4
-0.7
metal limitation
Anaerobic, no Mo, no W, sample1
-0.3
-0.2
-0.5
-0.3
-0.7
stress
sodium fluoride 6.25 mM
-0.2
-0.7
-0.6
-0.3
-0.1
metal limitation
Anaerobic, no Mo, no W, sample2
-0.2
-0.5
-0.3
-0.2
-0.6
carbon source
Anaerobic, Glucose Nitrate sample3
-0.2
-0.3
-0.4
-0.2
-0.7
stress
Anaerobic 500 uM Zinc chloride sample1
-0.5
-0.1
-0.2
-0.4
-0.6
metal limitation
Anaerobic, no iron sample2
-0.3
-0.2
-0.6
-0.2
-0.4
stress
Nalidixic 0.00390625 mg/ml
+0.1
-0.5
-0.3
-0.3
-0.7
stress
nitrate 200 mM
-0.5
+0.1
-0.6
-0.1
-0.7
stress
Cisplatin 0.003 mg/ml
-0.6
-0.8
-0.3
-0.1
+0.1
RCH2 grown on a colony of ecoli
-0.3
-0.5
+0.2
-0.6
-0.4
vitamin
With vitamins t1
+0.4
-0.6
-0.8
-0.1
-0.3
stress
Def Chloride 400 mM
-0.3
-0.6
+0.0
-0.6
+0.2
RCH2 grown on a colony of N2C3
+0.2
-0.4
+0.1
-0.6
-0.4
stress
Cisplatin 0.0016 mg/ml
-0.6
-0.2
+0.3
-0.2
-0.4
stress
Carbenicillin 0.0065 mg/ml
+0.4
-0.5
-0.5
-0.4
+0.0
RCH2 grown on a colony of N2F3
-0.3
+0.2
+0.2
+0.4
-0.8
RCH2 grown on a colony of Serratia
+1.2
+0.2
-0.9
-0.4
-0.4
vitamin
No vitamins t1
+0.6
-0.3
+0.4
-0.2
-0.5
stress
Cephalothin 0.04 mg/ml
+0.6
-0.1
+0.5
-0.3
+0.3
RCH2 grown on a colony of ecoli
-0.4
+0.6
-0.1
+0.4
+0.5
stress
Def Carbenicillin 0.008 mg/ml
+0.7
+0.1
+0.9
-0.4
-0.0
stress
Def Carbenicillin 0.02 mg/ml
+0.3
+0.9
+1.1
-0.2
+0.1
nitrogen source
nitrite (N)
+0.4
+0.4
+1.0
+0.3
+0.1
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