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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2170 and Psest_2171 overlap by 4 nucleotides
Psest_2171 and Psest_2172 are separated by 12 nucleotides
Psest_2172 and Psest_2173 are separated by 299 nucleotides
Psest_2173 and Psest_2174 are separated by 0 nucleotides
Psest_2170: Psest_2170 - 4-alpha-glucanotransferase, at 2,324,956 to 2,327,031
_2170
Psest_2171: Psest_2171 - malto-oligosyltrehalose trehalohydrolase, at 2,327,028 to 2,328,803
_2171
Psest_2172: Psest_2172 - glycogen/starch synthases, ADP-glucose type, at 2,328,816 to 2,330,366
_2172
Psest_2173: Psest_2173 - competence/damage-inducible protein CinA C-terminal domain, at 2,330,666 to 2,331,172
_2173
Psest_2174: Psest_2174 - Small-conductance mechanosensitive channel, at 2,331,173 to 2,332,252
_2174
Group
Condition
Psest
_2170
Psest
_2171
Psest
_2172
Psest
_2173
Psest
_2174
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.1
-0.8
-0.4
-0.6
-0.5
nitrogen source
L-Isoleucine (N)
-0.7
-0.5
-0.5
-0.2
-0.3
RCH2 grown on a colony of N2C3
-0.4
-0.1
-0.4
-0.7
-0.3
lb
LB
-0.3
-0.3
-0.2
-0.5
-0.2
stress
Thallium(I) acetate 0.08 mg/ml
-0.5
+0.2
-0.0
-0.9
-0.2
nitrogen source
Putrescine (N)
-0.5
-0.3
-0.6
+0.1
-0.1
stress
Lactate-nitrate; anaerobic; dichromate stress sample3
-0.1
-0.3
+0.1
-0.9
-0.2
vitamin
With vitamins t1
-0.4
+0.1
-0.2
-0.8
+0.0
stress
L-Lysine 200 mM
-0.6
-0.1
-0.3
+0.1
-0.4
stress
nitrate 250 mM
+0.3
-0.5
-0.3
-0.2
-0.5
carbon source
L-Lactate (C)
+0.2
-0.4
-0.1
-0.4
-0.4
stress
L-Lysine 200 mM
-0.0
-0.4
-0.2
-0.7
+0.3
stress
2-Furfuraldehyde 0.05 vol%
-0.1
+0.2
+0.0
-1.2
+0.1
stress
Def Carbenicillin 0.008 mg/ml
+0.5
-0.3
+0.1
-0.8
-0.3
RCH2 grown on a colony of ecoli
-0.6
+0.3
-0.2
-0.5
+0.3
stress
Nalidixic 0.00390625 mg/ml
+0.0
+0.4
-0.2
-0.8
-0.2
stress
Carbenicillin 0.0065 mg/ml
-0.2
-0.6
-0.3
+0.2
+0.3
stress
Def Carbenicillin 0.02 mg/ml
-0.7
+0.2
+0.3
-0.5
+0.3
RCH2 grown on a colony of Serratia
-0.5
-0.3
-0.2
+0.6
+0.1
carbon source
propionate (C)
-0.3
+0.3
+0.3
-0.7
+0.2
stress
nitrate 200 mM
+0.6
-0.1
-0.3
-0.5
+0.1
stress
Doxycycline hyclate 0.0002 mg/ml
+0.4
-0.5
-0.2
+0.4
+0.0
stress
Thallium(I) acetate 0.08 mg/ml
-0.3
-0.3
-0.1
+0.9
-0.0
carbon source
propionate (C)
+0.1
+0.6
+0.2
-0.5
-0.2
stress
Benzethonium chloride 0.0125 mM
+0.4
+0.4
+0.3
-0.5
-0.1
carbon source
L-tyrosine (C)
-0.4
+0.2
+0.4
+0.7
-0.1
stress
Nickel (II) chloride 0.8 mM
-0.3
-0.1
-0.0
+0.9
+0.2
RCH2 grown on a colony of N2A2
+0.7
+0.4
+0.2
-0.5
-0.0
lb
LB
+0.6
+0.3
+0.2
+0.5
+0.2
stress
Chlorate 75 mM
+0.5
+0.0
-0.2
+1.2
+0.3
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