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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2168 and Psest_2169 are separated by 22 nucleotides
Psest_2169 and Psest_2170 overlap by 4 nucleotides
Psest_2170 and Psest_2171 overlap by 4 nucleotides
Psest_2171 and Psest_2172 are separated by 12 nucleotides
Psest_2168: Psest_2168 - Protein of unknown function (DUF2934)., at 2,321,821 to 2,322,150
_2168
Psest_2169: Psest_2169 - malto-oligosyltrehalose synthase, at 2,322,173 to 2,324,959
_2169
Psest_2170: Psest_2170 - 4-alpha-glucanotransferase, at 2,324,956 to 2,327,031
_2170
Psest_2171: Psest_2171 - malto-oligosyltrehalose trehalohydrolase, at 2,327,028 to 2,328,803
_2171
Psest_2172: Psest_2172 - glycogen/starch synthases, ADP-glucose type, at 2,328,816 to 2,330,366
_2172
Group
Condition
Psest
_2168
Psest
_2169
Psest
_2170
Psest
_2171
Psest
_2172
nitrogen source
L-Isoleucine (N)
N.D.
-0.5
-0.7
-0.5
-0.5
nitrogen source
Putrescine (N)
N.D.
-0.2
-0.5
-0.3
-0.6
stress
A22 0.005 mg/ml
N.D.
-0.7
-0.5
-0.2
-0.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
-0.2
+0.1
-0.8
-0.4
lb
LB
N.D.
-0.5
-0.3
-0.3
-0.2
RCH2 grown on a colony of N2C3
N.D.
-0.3
-0.4
-0.1
-0.4
stress
Carbenicillin 0.0065 mg/ml
N.D.
-0.0
-0.2
-0.6
-0.3
stress
L-Lysine 200 mM
N.D.
-0.3
-0.6
-0.1
-0.3
carbon source
D-Maltose (C)
N.D.
-0.2
-0.6
-0.1
-0.4
nitrogen source
L-Isoleucine (N)
N.D.
+0.2
-0.2
-0.3
-0.5
stress
D-Cycloserine 0.032 mg/ml
N.D.
+0.3
-0.7
-0.1
-0.2
stress
Cobalt chloride 0.07 mM
N.D.
-0.2
-0.7
-0.1
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
-0.6
-0.2
+0.3
-0.2
RCH2 grown on a colony of ecoli
N.D.
+0.1
-0.6
+0.3
-0.2
stress
nitrate 250 mM
N.D.
+0.3
+0.3
-0.5
-0.3
stress
Doxycycline hyclate 0.0002 mg/ml
N.D.
+0.1
+0.4
-0.5
-0.2
nitrogen source
L-Isoleucine (N)
N.D.
+0.4
+0.3
-0.1
-0.5
carbon source
L-tyrosine (C)
N.D.
-0.1
-0.4
+0.2
+0.4
stress
Def Cephalothin 0.04 mg/ml
N.D.
+0.3
-0.5
+0.1
+0.5
stress
Def Carbenicillin 0.02 mg/ml
N.D.
+0.7
-0.7
+0.2
+0.3
stress
Benzethonium chloride 0.01 mM
N.D.
+0.3
+0.7
-0.3
-0.0
stress
nitrate 200 mM
N.D.
+0.4
+0.6
-0.1
-0.3
stress
Def Carbenicillin 0.008 mg/ml
N.D.
+0.6
+0.5
-0.3
+0.1
stress
Chlorate 75 mM
N.D.
+0.7
+0.5
+0.0
-0.2
nitrogen source
Putrescine (N)
N.D.
+0.4
+0.1
+0.2
+0.5
nitrogen source
Parabanic Acid (N)
N.D.
+0.2
+0.4
+0.3
+0.2
temperature
LB 30C timecourse1 timepoint 1
N.D.
+0.3
+0.5
+0.3
+0.1
stress
Nickel (II) chloride 0.8 mM
N.D.
+0.5
+0.4
+0.3
+0.1
stress
perchlorate 25 mM
N.D.
+0.5
+0.4
+0.2
+0.2
RCH2 grown on a colony of N2A2
N.D.
-0.0
+0.7
+0.4
+0.2
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