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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2149 and Psest_2150 are separated by 95 nucleotides
Psest_2150 and Psest_2151 are separated by 289 nucleotides
Psest_2151 and Psest_2152 are separated by 10 nucleotides
Psest_2152 and Psest_2153 overlap by 4 nucleotides
Psest_2149: Psest_2149 - Ku protein, prokaryotic, at 2,295,019 to 2,295,900
_2149
Psest_2150: Psest_2150 - DNA polymerase LigD, polymerase domain, at 2,295,996 to 2,296,919
_2150
Psest_2151: Psest_2151 - formate dehydrogenase, alpha subunit, proteobacterial-type, at 2,297,209 to 2,300,274
_2151
Psest_2152: Psest_2152 - formate dehydrogenase, beta subunit, Fe-S containing, at 2,300,285 to 2,301,223
_2152
Psest_2153: Psest_2153 - formate dehydrogenase, gamma subunit, at 2,301,220 to 2,301,924
_2153
Group
Condition
Psest
_2149
Psest
_2150
Psest
_2151
Psest
_2152
Psest
_2153
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.9
-1.2
-0.4
-0.2
-0.5
lb
LB
-0.1
-0.7
-0.3
+0.0
-1.3
stress
5-Hydroxymethylfurfural 5 mM
-0.2
-1.4
-0.3
-0.5
-0.0
stress
2-Furfuraldehyde 0.05 vol%
-0.0
-1.5
-0.4
+0.3
-0.6
stress
Def Carbenicillin 0.02 mg/ml
-0.1
+0.3
+0.0
-0.1
-2.4
stress
Cobalt chloride 0.08 mM
+0.1
+0.1
-0.0
-0.5
-1.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.5
-1.3
-0.1
+0.1
+0.3
RCH2 grown on a colony of Serratia
+0.0
-1.6
-0.3
-0.5
+1.0
vitamin
With vitamins t2
-0.3
+0.1
+0.4
-0.3
-1.2
stress
Cobalt chloride 0.05 mM
-0.2
-1.4
+0.1
+0.0
+0.3
stress
Def Carbenicillin 0.008 mg/ml
-0.7
+0.5
+0.1
-0.1
-0.9
nitrogen source
Putrescine (N)
+0.4
-0.9
-0.2
+0.3
-0.4
stress
Def Neomycin 0.0008 mg/ml
-0.4
-1.3
-0.0
+0.4
+0.4
RCH2 grown on a colony of N2F3
-0.1
-1.7
+0.2
+0.1
+0.9
carbon source
L-Alanine (C)
+0.2
-1.3
-0.1
+0.1
+0.4
stress
Cobalt chloride 0.08 mM
+0.3
-1.4
+0.0
+0.0
+0.7
stress
nitrite 2.5 mM
+0.0
+1.0
+0.1
-0.0
-1.3
carbon source
D-Gluconic Acid (C)
-0.0
+1.0
+0.1
-0.2
-1.1
nutrient
Min media with glucose
-0.1
+0.8
+0.2
-0.3
-0.7
radiation
Ionizing radiation, 319.06 Gy,
+0.1
-0.7
+0.1
-0.4
+1.0
RCH2 grown on a colony of N2C3
+0.3
-1.4
+0.7
+0.3
+0.3
carbon source
butyrate (C)
-0.0
-0.5
+0.4
+0.1
+1.3
stress
nitrate 250 mM
+0.2
+1.3
+0.2
+0.3
-0.4
nutrient
Min media with glucose
+0.3
+1.1
-0.1
-0.1
+0.6
RCH2 grown on a colony of N2A2
+0.2
+1.6
-0.1
-0.0
+0.3
stress
Chlorate 75 mM
+0.5
-0.3
-0.0
+0.9
+1.1
stress
Benzalkonium Chloride 0.002 mg/ml
-0.1
+0.6
+0.2
+0.2
+1.2
stress
Def Nalidixic 0.001 mg/ml
+0.3
+0.8
+0.3
+0.3
+0.3
stress
Benzethonium chloride 0.01 mM
+0.2
+0.7
+0.2
+0.5
+0.5
RCH2 grown on a colony of N2A2
+0.3
+2.0
+0.5
-0.0
+0.9
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