Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2123 and Psest_2124 are separated by 51 nucleotidesPsest_2124 and Psest_2125 are separated by 61 nucleotidesPsest_2125 and Psest_2126 are separated by 58 nucleotidesPsest_2126 and Psest_2127 are separated by 24 nucleotides Psest_2123: Psest_2123 - fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data), at 2,254,074 to 2,255,204 _2123 Psest_2124: Psest_2124 - D-gluconate TRAP transporter, large permease component (from data), at 2,255,256 to 2,256,533 _2124 Psest_2125: Psest_2125 - D-gluconate TRAP transporter, periplasmic component (from data), at 2,256,595 to 2,257,611 _2125 Psest_2126: Psest_2126 - Transcriptional regulators, at 2,257,670 to 2,258,689 _2126 Psest_2127: Psest_2127 - Transcriptional regulator, at 2,258,714 to 2,259,625 _2127
Group Condition Psest_2123 Psest_2124 Psest_2125 Psest_2126 Psest_2127
carbon source D-Gluconic Acid (C) -5.6 -4.8 -4.4 +3.0 +0.0
carbon source D-Gluconic Acid (C) -4.4 -4.0 -5.4 +3.6 -0.2
carbon source L-Alanine (C) -4.3 -0.2 -0.5 +0.3 -0.1
RCH2 grown on a colony of ecoli -0.3 -0.5 +0.3 -3.1 +0.1
RCH2 grown on a colony of ecoli +0.2 +0.1 +0.4 -4.1 +0.1
stress Benzethonium chloride 0.0125 mM -3.2 -0.1 +0.4 -0.2 -0.0
stress methylglyoxal 0.0016 vol% -2.8 -0.2 -0.2 +0.3 +0.1
stress Nickel (II) chloride 0.9 mM -1.9 -0.1 -0.2 -0.2 -0.3
stress Furfuryl Alcohol 0.05 vol% -2.2 -0.1 -0.1 +0.4 -0.3
stress acetate 80 mM -2.4 +0.5 -0.1 -0.0 -0.1
RCH2 grown on a colony of 8R2A -1.2 -0.4 -0.1 -0.8 +0.4
RCH2 grown on a colony of Serratia -0.1 -0.3 +0.5 -2.0 -0.1
stress Fusidic 0.016 mg/ml -2.0 +0.3 +0.0 -0.5 +0.1
stress Gentamicin 0.0016 mg/ml -2.5 +0.1 -0.0 +0.3 +0.2
stress Cobalt chloride 0.05 mM -2.3 -0.4 +0.0 +0.3 +0.4
nutrient Min media with glucose -2.3 +0.2 -0.0 +0.1 +0.1
stress D-Cycloserine 0.032 mg/ml -1.7 -0.7 +0.4 +0.3 +0.0
RCH2 grown on a colony of N2F3 -0.1 -0.4 -0.5 -1.3 +0.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -0.6 -0.0 -0.5 -1.3 +0.7
RCH2 grown on a colony of Serratia +1.1 -0.4 -0.3 -1.4 -0.6
stress Def Chloride 400 mM -2.2 +0.3 +0.2 -0.1 +0.3
stress Paraquat dichloride 0.015 mg/ml -1.6 +0.0 +0.6 +0.1 -0.4
stress Lactate-nitrate; anaerobic; copper stress sample1 -1.2 -0.4 -0.4 +0.5 +0.1
stress Cobalt chloride 0.05 mM -1.7 -0.1 -0.2 +0.4 +0.4
nitrogen source L-Glutamine (N) -1.9 +0.3 +0.1 +0.5 +0.0
stress Furfuryl Alcohol 0.2 vol% -1.3 -0.1 -0.4 +0.7 +0.3
stress L-Lysine 200 mM -1.4 +0.3 -0.1 +0.4 +0.4
RCH2 grown on a colony of N2C3 +1.0 +0.6 -0.3 -0.7 -0.3
nitrogen source L-Glutamic (N) +0.8 +0.6 +0.3 +1.0 -0.2
nitrogen source L-Glutamic (N) +1.7 +0.2 -0.1 +0.5 +0.3
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