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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_2122 and Psest_2123 are separated by 176 nucleotides
Psest_2123 and Psest_2124 are separated by 51 nucleotides
Psest_2124 and Psest_2125 are separated by 61 nucleotides
Psest_2125 and Psest_2126 are separated by 58 nucleotides
Psest_2122: Psest_2122 - Parvulin-like peptidyl-prolyl isomerase, at 2,253,619 to 2,253,897
_2122
Psest_2123: Psest_2123 - fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter
(from data)
, at 2,254,074 to 2,255,204
_2123
Psest_2124: Psest_2124 - D-gluconate TRAP transporter, large permease component
(from data)
, at 2,255,256 to 2,256,533
_2124
Psest_2125: Psest_2125 - D-gluconate TRAP transporter, periplasmic component
(from data)
, at 2,256,595 to 2,257,611
_2125
Psest_2126: Psest_2126 - Transcriptional regulators, at 2,257,670 to 2,258,689
_2126
Group
Condition
Psest
_2122
Psest
_2123
Psest
_2124
Psest
_2125
Psest
_2126
carbon source
D-Gluconic Acid (C)
+0.2
-5.6
-4.8
-4.4
+3.0
carbon source
D-Gluconic Acid (C)
-0.7
-4.4
-4.0
-5.4
+3.6
carbon source
L-Alanine (C)
-2.1
-4.3
-0.2
-0.5
+0.3
RCH2 grown on a colony of N2F3
-4.0
-0.1
-0.4
-0.5
-1.3
stress
Benzethonium chloride 0.0125 mM
-2.1
-3.2
-0.1
+0.4
-0.2
stress
methylglyoxal 0.0016 vol%
-2.0
-2.8
-0.2
-0.2
+0.3
RCH2 grown on a colony of ecoli
-1.2
-0.3
-0.5
+0.3
-3.1
RCH2 grown on a colony of ecoli
-0.6
+0.2
+0.1
+0.4
-4.1
RCH2 grown on a colony of 8R2A
-1.3
-1.2
-0.4
-0.1
-0.8
stress
Def Chloride 400 mM
-1.7
-2.2
+0.3
+0.2
-0.1
stress
Def Carbenicillin 0.008 mg/ml
-2.9
-0.3
+0.1
-0.1
-0.2
stress
Cobalt chloride 0.05 mM
-1.0
-2.3
-0.4
+0.0
+0.3
stress
Furfuryl Alcohol 0.05 vol%
-1.1
-2.2
-0.1
-0.1
+0.4
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-2.5
-0.2
-0.5
-0.1
+0.5
stress
Fusidic 0.016 mg/ml
-0.7
-2.0
+0.3
+0.0
-0.5
nitrogen source
L-Glutamine (N)
-1.6
-1.9
+0.3
+0.1
+0.5
RCH2 grown on a colony of Serratia
-1.2
+1.1
-0.4
-0.3
-1.4
stress
Vanillin 2 mM
-1.1
-1.1
+0.5
+0.3
-0.4
stress
Gentamicin 0.0016 mg/ml
+0.4
-2.5
+0.1
-0.0
+0.3
carbon source
propionate (C)
-2.7
+0.7
-0.0
-0.1
+0.7
lb
LB
-2.3
+0.6
+0.2
-0.1
+0.3
RCH2 grown on a colony of Serratia
+0.8
-0.1
-0.3
+0.5
-2.0
nutrient
Min media with glucose
+1.0
-2.3
+0.2
-0.0
+0.1
carbon source
propionate (C)
-2.5
+1.1
-0.2
+0.2
+0.4
temperature
LB 30C timecourse1 timepoint 1
-2.1
+1.1
-0.1
+0.1
+0.2
stress
Cobalt chloride 0.05 mM
+1.0
-1.7
-0.1
-0.2
+0.4
nitrogen source
L-Glutamic (N)
-1.8
+1.7
+0.2
-0.1
+0.5
nitrogen source
L-Valine (N)
+1.2
-1.0
+0.5
-0.2
+0.6
nitrogen source
Putrescine (N)
+2.0
-0.9
+0.5
-0.1
+0.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+2.0
+0.9
-0.5
-0.5
+0.2
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