Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2116 and Psest_2117 are separated by 42 nucleotidesPsest_2117 and Psest_2118 are separated by 75 nucleotidesPsest_2118 and Psest_2119 are separated by 21 nucleotidesPsest_2119 and Psest_2120 are separated by 121 nucleotides Psest_2116: Psest_2116 - TonB-dependent siderophore receptor, at 2,246,589 to 2,248,700 _2116 Psest_2117: Psest_2117 - TRAP transporter solute receptor, TAXI family, at 2,248,743 to 2,249,723 _2117 Psest_2118: Psest_2118 - Putative translation initiation inhibitor, yjgF family, at 2,249,799 to 2,250,153 _2118 Psest_2119: Psest_2119 - Glycine/D-amino acid oxidases (deaminating), at 2,250,175 to 2,251,419 _2119 Psest_2120: Psest_2120 - Transcriptional regulator, at 2,251,541 to 2,252,449 _2120
Group Condition Psest_2116 Psest_2117 Psest_2118 Psest_2119 Psest_2120
nitrogen source L-Isoleucine (N) +0.1 -0.2 N.D. -1.4 -2.0
stress Def Cephalothin 0.08 mg/ml -0.2 -0.0 N.D. -0.3 -2.7
stress acetate 80 mM -0.2 -0.3 N.D. -1.0 -1.6
stress Def Cephalothin 0.04 mg/ml -0.1 -0.0 N.D. -0.2 -2.6
nitrogen source L-Glutamic (N) +0.2 -0.2 N.D. -0.6 -1.6
anaerobic Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten -0.0 -0.2 N.D. -1.6 -0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +0.1 -0.3 N.D. -0.6 -1.2
stress sodium fluoride 6.25 mM -0.0 -0.0 N.D. -1.0 -1.0
nitrogen source nitrite (N) -0.3 +0.2 N.D. -0.8 -1.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -0.1 +0.3 N.D. -0.6 -1.4
anaerobic Nitrate/ lactate media with Nitrate 20mM -0.0 +0.2 N.D. -0.8 -1.2
lb LB -0.4 +0.0 N.D. +0.4 -1.8
stress Neomycin 0.004 mg/ml -0.1 +0.1 N.D. -0.3 -1.4
stress Def Benzalkonium Chloride 0.002 mg/ml -0.3 -0.1 N.D. +1.0 -0.9
temperature LB 26C sample1 -0.1 -0.1 N.D. -0.9 +1.0
temperature LB 30C timecourse2 timepoint 2 +0.1 +0.2 N.D. -1.0 +1.9
stress nitrate 200 mM -0.3 -0.0 N.D. +0.9 +0.8
stress Lactate-nitrate; anaerobic; copper stress sample2 -0.2 +0.4 N.D. +0.2 +1.2
carbon source Glucose defined media -0.1 +0.1 N.D. +0.1 +1.6
metal limitation Lactate-nitrite; anaerobic; sample3 -0.1 +0.4 N.D. +0.9 +0.6
RCH2 grown on a colony of Serratia -0.1 +0.2 N.D. +0.6 +1.1
temperature LB 30C timecourse2 timepoint 1 -0.0 +0.2 N.D. +0.2 +1.6
temperature LB 30C timecourse1 timepoint 1 -0.0 +0.1 N.D. +1.0 +1.1
stress Def Thallium(I) acetate 0.125 mg/ml +0.0 +0.5 N.D. +1.0 +0.6
carbon source L-Proline (C) +0.1 +0.2 N.D. +0.8 +1.3
carbon source L-Lactate (C) -0.2 +0.3 N.D. +0.6 +1.9
stress Def Carbenicillin 0.008 mg/ml +0.1 +0.6 N.D. +1.1 +0.7
carbon source L-Asparagine (C) -0.1 +0.3 N.D. +0.5 +1.9
stress Chlorate 75 mM +0.4 +0.6 N.D. +1.0 +1.3
stress Def Carbenicillin 0.02 mg/ml +0.4 +0.4 N.D. +1.9 +0.8
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