Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2115 and Psest_2116 are separated by 350 nucleotidesPsest_2116 and Psest_2117 are separated by 42 nucleotidesPsest_2117 and Psest_2118 are separated by 75 nucleotidesPsest_2118 and Psest_2119 are separated by 21 nucleotides Psest_2115: Psest_2115 - ATPase components of ABC transporters with duplicated ATPase domains, at 2,244,649 to 2,246,238 _2115 Psest_2116: Psest_2116 - TonB-dependent siderophore receptor, at 2,246,589 to 2,248,700 _2116 Psest_2117: Psest_2117 - TRAP transporter solute receptor, TAXI family, at 2,248,743 to 2,249,723 _2117 Psest_2118: Psest_2118 - Putative translation initiation inhibitor, yjgF family, at 2,249,799 to 2,250,153 _2118 Psest_2119: Psest_2119 - Glycine/D-amino acid oxidases (deaminating), at 2,250,175 to 2,251,419 _2119
Group Condition Psest_2115 Psest_2116 Psest_2117 Psest_2118 Psest_2119
stress Choline chloride 90 mM -1.5 -0.3 +0.1 N.D. -0.7
carbon source L-tyrosine (C) -0.6 -0.2 -0.3 N.D. -0.6
nitrogen source L-Isoleucine (N) -0.1 +0.1 -0.2 N.D. -1.4
stress acetate 80 mM -0.0 -0.2 -0.3 N.D. -1.0
anaerobic Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten +0.4 -0.0 -0.2 N.D. -1.6
nitrogen source nitrite (N) -0.3 -0.3 +0.2 N.D. -0.8
stress Nalidixic 0.00390625 mg/ml +0.3 +0.1 -0.6 N.D. -0.8
stress Choline chloride 90 mM -1.2 +0.1 +0.1 N.D. +0.1
vitamin No vitamins t2 +0.3 +0.1 -0.1 N.D. -0.8
stress 2-Furfuraldehyde 0.05 vol% -0.2 +0.2 +0.2 N.D. -0.8
temperature LB 30C timecourse2 timepoint 2 +0.2 +0.1 +0.2 N.D. -1.0
stress nitrate 250 mM -0.4 +0.3 +0.3 N.D. -0.5
carbon source propionate (C) -0.4 -0.3 +0.0 N.D. +0.6
stress Def Benzalkonium Chloride 0.002 mg/ml -0.6 -0.3 -0.1 N.D. +1.0
stress Furfuryl Alcohol 0.05 vol% +0.2 -0.5 -0.1 N.D. +0.5
RCH2 grown on a colony of N2F3 +0.5 +0.1 +0.7 N.D. -0.8
stress Gentamicin 0.0016 mg/ml -0.4 +0.1 +0.4 N.D. +0.7
metal limitation Lactate-nitrite; anaerobic; sample3 -0.2 -0.1 +0.4 N.D. +0.9
stress perchlorate 25 mM +0.1 -0.1 +0.4 N.D. +0.7
stress nitrate 200 mM +0.6 -0.3 -0.0 N.D. +0.9
RCH2 grown on a colony of N2C3 +0.1 -0.2 +0.6 N.D. +0.7
temperature LB 30C timecourse1 timepoint 1 +0.4 -0.0 +0.1 N.D. +1.0
stress Lactate-nitrate; anaerobic; cadmium stress sample1 +0.3 -0.0 +0.3 N.D. +0.8
stress Polymyxin B sulfate 0.0001 mg/ml +0.3 +0.1 +0.3 N.D. +0.9
stress Def Chloride 400 mM +0.3 +0.4 +0.4 N.D. +0.5
stress Def Thallium(I) acetate 0.125 mg/ml +0.1 +0.0 +0.5 N.D. +1.0
stress Def Carbenicillin 0.008 mg/ml -0.2 +0.1 +0.6 N.D. +1.1
stress Benzalkonium Chloride 0.002 mg/ml +0.2 +0.2 +0.4 N.D. +0.9
stress Chlorate 75 mM +0.5 +0.4 +0.6 N.D. +1.0
stress Def Carbenicillin 0.02 mg/ml -0.2 +0.4 +0.4 N.D. +1.9
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