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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2114 and Psest_2115 are separated by 114 nucleotides
Psest_2115 and Psest_2116 are separated by 350 nucleotides
Psest_2116 and Psest_2117 are separated by 42 nucleotides
Psest_2117 and Psest_2118 are separated by 75 nucleotides
Psest_2114: Psest_2114 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,243,575 to 2,244,534
_2114
Psest_2115: Psest_2115 - ATPase components of ABC transporters with duplicated ATPase domains, at 2,244,649 to 2,246,238
_2115
Psest_2116: Psest_2116 - TonB-dependent siderophore receptor, at 2,246,589 to 2,248,700
_2116
Psest_2117: Psest_2117 - TRAP transporter solute receptor, TAXI family, at 2,248,743 to 2,249,723
_2117
Psest_2118: Psest_2118 - Putative translation initiation inhibitor, yjgF family, at 2,249,799 to 2,250,153
_2118
Group
Condition
Psest
_2114
Psest
_2115
Psest
_2116
Psest
_2117
Psest
_2118
stress
Choline chloride 90 mM
-0.4
-1.5
-0.3
+0.1
N.D.
stress
Neomycin 0.004 mg/ml
-1.3
-0.6
-0.1
+0.1
N.D.
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.7
-0.6
-0.3
-0.1
N.D.
stress
Choline Lysine 20 mM
-0.7
-0.8
-0.1
+0.0
N.D.
stress
Neomycin 0.004 mg/ml
-1.2
+0.0
-0.2
-0.1
N.D.
nitrogen source
L-Glutamic (N)
-1.0
-0.2
-0.0
-0.1
N.D.
stress
Choline Lysine 20 mM
-1.1
-0.6
-0.1
+0.4
N.D.
stress
Choline chloride 90 mM
-0.4
-1.2
+0.1
+0.1
N.D.
stress
Carbenicillin 0.008 mg/ml
-1.3
-0.2
-0.1
+0.4
N.D.
stress
Cisplatin 0.003 mg/ml
-0.9
+0.1
-0.4
+0.0
N.D.
stress
Carbenicillin 0.008 mg/ml
-0.9
-0.4
+0.1
-0.1
N.D.
stress
A22 0.005 mg/ml
-1.1
+0.1
+0.0
-0.2
N.D.
nitrogen source
nitrite (N)
-0.7
-0.3
-0.3
+0.2
N.D.
stress
D-Cycloserine 0.032 mg/ml
-1.2
+0.1
-0.1
+0.2
N.D.
stress
Vancomycin 0.016 mg/ml
-0.8
-0.3
-0.1
+0.2
N.D.
stress
nitrate 250 mM
-1.2
-0.4
+0.3
+0.3
N.D.
stress
Carbenicillin 0.0065 mg/ml
-1.1
+0.1
-0.1
+0.2
N.D.
carbon source
L-Lactate (C)
-0.9
-0.1
-0.2
+0.3
N.D.
stress
Gentamicin 0.0016 mg/ml
-0.7
-0.4
+0.1
+0.4
N.D.
stress
Bacitracin 0.25 mg/ml
-0.6
-0.3
-0.1
+0.4
N.D.
nutrient
L-tyrosine
-0.6
+0.6
-0.0
-0.1
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.8
+0.3
+0.1
+0.3
N.D.
carbon source
propionate (C)
+0.6
-0.4
-0.3
+0.0
N.D.
stress
Def Chloride 400 mM
-1.2
+0.3
+0.4
+0.4
N.D.
stress
Benzethonium chloride 0.01 mM
+0.8
+0.2
-0.3
-0.4
N.D.
stress
Lactate-nitrate; anaerobic; cadmium stress sample3
-0.5
+0.3
+0.0
+0.5
N.D.
RCH2 grown on a colony of N2F3
+0.4
-0.2
+0.4
+0.4
N.D.
RCH2 grown on a colony of N2F3
-0.4
+0.5
+0.1
+0.7
N.D.
stress
Chlorate 75 mM
-0.4
+0.5
+0.4
+0.6
N.D.
stress
Def Carbenicillin 0.02 mg/ml
+0.9
-0.2
+0.4
+0.4
N.D.
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