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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_2100 and Psest_2101 are separated by 7 nucleotides
Psest_2101 and Psest_2102 are separated by 57 nucleotides
Psest_2102 and Psest_2103 are separated by 162 nucleotides
Psest_2103 and Psest_2104 are separated by 126 nucleotides
Psest_2100: Psest_2100 - Predicted acyltransferases, at 2,226,970 to 2,228,082
_2100
Psest_2101: Psest_2101 - hypothetical protein, at 2,228,090 to 2,228,416
_2101
Psest_2102: Psest_2102 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 2,228,474 to 2,232,166
_2102
Psest_2103: Psest_2103 - Fatty acid cis/trans isomerase (CTI)., at 2,232,329 to 2,234,605
_2103
Psest_2104: Psest_2104 - IscR-regulated protein YhgI, at 2,234,732 to 2,235,316
_2104
Group
Condition
Psest
_2100
Psest
_2101
Psest
_2102
Psest
_2103
Psest
_2104
RCH2 grown on a colony of N2F3
-0.1
-5.1
+1.6
+0.1
-1.4
carbon source
L-Lactate (C)
-0.0
+0.2
+0.0
-0.3
-4.5
anaerobic
Nitrite/ lactate media with Nitrite 20mM
+0.4
-2.8
-0.1
-0.2
-1.4
temperature
Glucose defined 30C timecourse1 timepoint 3
-0.1
-0.3
+0.0
-0.1
-3.6
carbon source
D-Maltose (C)
+0.0
-0.6
-0.9
-0.0
-2.3
carbon source
D-Maltose (C)
-0.1
-0.8
-0.7
+0.0
-2.3
nitrogen source
D-Alanine (N)
-0.2
-0.5
+0.2
-0.0
-3.3
stress
Def Carbenicillin 0.02 mg/ml
-0.4
-0.3
-0.1
+0.0
-2.9
stress
Nickel (II) chloride 0.8 mM
-0.1
+0.2
+0.2
-0.0
-3.8
stress
perchlorate 25 mM
-0.1
-0.1
+0.1
+0.1
-3.4
RCH2 grown on a colony of N2C3
-0.2
-3.5
+1.6
+0.0
-1.2
stress
Cobalt chloride 0.06 mM
+0.0
+0.3
+0.0
+0.1
-3.5
nitrogen source
Ammonium chloride (N)
+0.1
+0.4
-0.3
-0.0
-3.1
stress
Def Polymyxin B sulfate 0.0001 mg/ml
+0.0
+0.4
+0.4
-0.1
-3.5
stress
D-Cycloserine 0.032 mg/ml
+0.2
-1.5
+0.8
-0.2
-1.6
nitrogen source
L-Alanine (N)
-0.3
+0.2
+0.5
+0.1
-2.7
nitrogen source
nitrite (N)
-0.1
-0.2
+1.1
-0.0
-2.8
stress
nitrate 250 mM
-0.1
+0.8
+0.2
-0.2
-2.7
stress
Paraquat dichloride 0.015 mg/ml
-0.3
-0.7
+1.1
-0.2
-1.6
nitrogen source
nitrite (N)
-0.1
+0.0
+1.3
+0.1
-2.5
stress
Def Benzethonium chloride 0.008 mM
+0.0
+1.2
+0.1
-0.2
-2.3
nitrogen source
L-Valine (N)
-0.0
+0.9
+0.4
-0.3
-2.1
stress
Benzethonium chloride 0.0125 mM
-0.2
+1.4
-0.2
-0.2
-1.8
carbon source
RCH2 defined media
-0.1
+1.0
+0.5
-0.2
-2.1
radiation
Ionizing radiation, 319.06 Gy,
+0.2
-2.1
-0.1
+0.0
+1.4
stress
Bacitracin 0.25 mg/ml
-0.5
-0.8
+0.4
-0.0
+2.4
stress
Choline Lysine 20 mM
-0.0
-1.6
+1.1
-0.0
+2.6
carbon source
L-tyrosine (C)
+0.2
-1.5
+1.8
-0.4
+4.1
stress
Chlorate 75 mM
+0.3
+1.9
+0.2
-0.2
+2.6
carbon source
L-tyrosine (C)
+0.1
+3.5
+1.8
-0.3
+4.0
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