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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_2099 and Psest_2100 are separated by 234 nucleotides
Psest_2100 and Psest_2101 are separated by 7 nucleotides
Psest_2101 and Psest_2102 are separated by 57 nucleotides
Psest_2102 and Psest_2103 are separated by 162 nucleotides
Psest_2099: Psest_2099 - nicotinamide mononucleotide transporter PnuC, at 2,226,172 to 2,226,735
_2099
Psest_2100: Psest_2100 - Predicted acyltransferases, at 2,226,970 to 2,228,082
_2100
Psest_2101: Psest_2101 - hypothetical protein, at 2,228,090 to 2,228,416
_2101
Psest_2102: Psest_2102 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 2,228,474 to 2,232,166
_2102
Psest_2103: Psest_2103 - Fatty acid cis/trans isomerase (CTI)., at 2,232,329 to 2,234,605
_2103
Group
Condition
Psest
_2099
Psest
_2100
Psest
_2101
Psest
_2102
Psest
_2103
vitamin
With vitamins t1
+0.3
-0.2
-2.7
-0.2
-0.1
RCH2 grown on a colony of N2F3
+0.8
-0.1
-5.1
+1.6
+0.1
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-0.0
+0.4
-2.8
-0.1
-0.2
carbon source
L-Glutamine (C)
+0.0
+0.1
-1.2
-1.2
+0.0
nitrogen source
L-Glutamic (N)
-0.0
-0.3
-1.4
-0.6
+0.1
radiation
Ionizing radiation, 319.06 Gy,
-0.2
+0.2
-2.1
-0.1
+0.0
nitrogen source
L-Glutamine (N)
+0.2
+0.3
-1.3
-1.1
-0.0
stress
5-Hydroxymethylfurfural 5 mM
-0.4
+0.1
-1.7
+0.1
-0.0
vitamin
With vitamins t2
+0.3
+0.0
-1.7
-0.2
-0.2
RCH2 grown on a colony of N2C3
+0.4
-0.2
-3.5
+1.6
+0.0
stress
Cholin acetate 40 mM
-0.6
+0.6
-1.7
+0.0
+0.0
stress
Cobalt chloride 0.05 mM
-0.3
+0.4
-1.6
-0.2
+0.1
nutrient
L-tyrosine
+0.5
-0.5
-1.2
-0.1
-0.0
anaerobic
Nitrite/ lactate media with Nitrite 20mM
+0.6
+0.1
-1.5
-0.2
-0.1
stress
Choline Lysine 20 mM
-0.2
-0.0
-1.6
+1.1
-0.0
stress
D-Cycloserine 0.032 mg/ml
-0.0
+0.2
-1.5
+0.8
-0.2
carbon source
L-tyrosine (C)
-0.4
+0.2
-1.5
+1.8
-0.4
stress
Paraquat dichloride 0.015 mg/ml
+0.1
-0.3
-0.7
+1.1
-0.2
stress
Def Carbenicillin 0.008 mg/ml
+0.2
-0.1
+1.5
-0.5
-0.4
stress
Paraquat dichloride 0.015 mg/ml
-0.5
-0.1
+0.8
+1.1
-0.2
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.7
-0.3
+0.8
+0.1
-0.3
stress
Cobalt chloride 0.08 mM
+0.4
-0.1
+1.3
-0.4
-0.1
stress
Benzethonium chloride 0.0125 mM
+0.4
-0.2
+1.4
-0.2
-0.2
stress
Choline chloride 90 mM
-0.5
+0.7
-0.0
+1.1
-0.0
RCH2 grown on a colony of Serratia
-0.3
+0.3
+1.3
-0.1
+0.3
RCH2 grown on a colony of N2F3
-0.1
+0.0
+0.4
+1.8
+0.0
stress
L-Lysine 200 mM
+0.4
-0.1
+1.5
+0.4
+0.0
stress
Chlorate 75 mM
+0.8
+0.3
+1.9
+0.2
-0.2
stress
Choline chloride 90 mM
+0.7
+0.2
+1.1
+1.2
+0.0
carbon source
L-tyrosine (C)
-0.3
+0.1
+3.5
+1.8
-0.3
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