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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0203 and Psest_0204 overlap by 8 nucleotides
Psest_0204 and Psest_0205 are separated by 182 nucleotides
Psest_0205 and Psest_0206 are separated by 27 nucleotides
Psest_0206 and Psest_0207 are separated by 78 nucleotides
Psest_0203: Psest_0203 - Signal transduction histidine kinase, at 202,804 to 204,204
_0203
Psest_0204: Psest_0204 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 204,197 to 204,868
_0204
Psest_0205: Psest_0205 - tricarboxylate porin
(from data)
, at 205,051 to 206,313
_0205
Psest_0206: Psest_0206 - Uncharacterized protein conserved in bacteria, at 206,341 to 207,315
_0206
Psest_0207: Psest_0207 - hypothetical protein, at 207,394 to 207,837
_0207
Group
Condition
Psest
_0203
Psest
_0204
Psest
_0205
Psest
_0206
Psest
_0207
carbon source
Trisodium citrate (C)
-4.7
-4.6
-2.8
-5.3
-5.5
carbon source
Trisodium citrate (C)
-5.0
-4.8
-2.6
-5.2
-4.4
stress
Nalidixic 0.00390625 mg/ml
-0.1
-0.5
-0.0
-0.2
-2.3
temperature
Glucose defined 30C timecourse1 timepoint 3
-0.3
+0.0
+0.0
-0.2
-2.1
stress
acetate 80 mM
-0.1
-0.6
-0.2
-0.1
-1.3
stress
Def Phosphomycin 0.125 mg/ml
-0.4
-0.6
-0.7
-0.2
-0.4
nitrogen source
L-Glutamic (N)
+0.1
-0.5
+0.2
+0.0
-1.9
carbon source
propionate (C)
+0.3
+0.2
+0.2
-0.0
-2.7
stress
Def Carbenicillin 0.02 mg/ml
+0.1
-0.7
-0.3
-0.4
-0.7
stress
Def Benzethonium chloride 0.008 mM
-0.4
-0.7
+0.1
+0.7
-1.6
stress
perchlorate 25 mM
+0.3
-0.3
-0.2
-0.1
-1.5
stress
Cobalt chloride 0.06 mM
+0.0
-0.0
-0.2
+0.4
-1.7
stress
Def Carbenicillin 0.008 mg/ml
-0.3
-0.6
+0.1
+0.4
-0.9
stress
Def Cisplatin 0.0002 mg/ml
-0.0
+0.4
+0.0
+0.2
-1.8
RCH2 grown on a colony of ecoli
-0.4
-0.7
-0.0
-0.4
+0.9
carbon source
RCH2 defined media
+0.1
+0.2
+0.3
+0.4
-1.4
stress
Def Doxycycline hyclate 0.0002 mg/ml
+0.8
+0.6
-0.0
+0.2
-1.7
stress
Vancomycin 0.016 mg/ml
+0.1
+0.5
+0.4
-0.3
-0.8
stress
Gentamicin 0.0016 mg/ml
+0.5
+0.5
+0.2
+0.5
-1.5
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.2
+0.2
+0.4
+0.7
-0.8
stress
Def Neomycin 0.0002 mg/ml
+0.9
+0.7
-0.0
+0.0
-0.6
stress
Def Nalidixic 0.001 mg/ml
+0.5
+0.3
+0.6
+0.5
-0.8
stress
Def Chlorate 20 mM
+0.4
+1.0
+0.5
+0.1
-0.5
stress
Def Chloride 400 mM
+0.6
+0.9
+0.3
+0.3
-0.6
stress
Cephalothin 0.04 mg/ml
+0.5
+0.3
+0.3
+1.0
-0.4
RCH2 grown on a colony of 8R2A
+0.0
-0.2
+0.1
+0.3
+1.6
stress
Def Chlorate 40 mM
+0.4
+0.9
+0.4
+0.5
-0.4
stress
Fusidic 0.016 mg/ml
+0.7
-0.1
+0.2
+0.8
+0.7
carbon source
L-Proline (C)
+0.6
+0.0
+0.1
+0.2
+1.5
stress
Chlorate 75 mM
+1.1
+1.3
+0.7
+0.2
+0.2
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