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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2073 and Psest_2074 are separated by 14 nucleotides
Psest_2074 and Psest_2075 are separated by 83 nucleotides
Psest_2075 and Psest_2076 are separated by 182 nucleotides
Psest_2076 and Psest_2077 are separated by 37 nucleotides
Psest_2073: Psest_2073 - Ribonuclease HI, at 2,202,015 to 2,202,470
_2073
Psest_2074: Psest_2074 - DNA polymerase III, epsilon subunit, Proteobacterial, at 2,202,485 to 2,203,210
_2074
Psest_2075: Psest_2075 - Arginine/lysine/ornithine decarboxylases, at 2,203,294 to 2,205,543
_2075
Psest_2076: Psest_2076 - Enoyl-CoA hydratase/carnithine racemase, at 2,205,726 to 2,206,538
_2076
Psest_2077: Psest_2077 - hypothetical protein, at 2,206,576 to 2,208,258
_2077
Group
Condition
Psest
_2073
Psest
_2074
Psest
_2075
Psest
_2076
Psest
_2077
stress
Choline Lysine 20 mM
N.D.
N.D.
-0.4
-0.8
-0.0
stress
Def Carbenicillin 0.008 mg/ml
N.D.
N.D.
-0.1
-0.8
-0.3
stress
Nickel (II) chloride 0.8 mM
N.D.
N.D.
-0.2
-0.5
-0.4
stress
Cobalt chloride 0.05 mM
N.D.
N.D.
-0.3
-0.6
-0.2
stress
Nickel (II) chloride 0.9 mM
N.D.
N.D.
-0.1
-0.1
-0.8
stress
Neomycin 0.004 mg/ml
N.D.
N.D.
-0.3
-0.3
-0.2
stress
Nickel (II) chloride 0.9 mM
N.D.
N.D.
-0.1
-0.3
-0.5
stress
Bacitracin 0.25 mg/ml
N.D.
N.D.
+0.1
-0.7
-0.3
stress
Def Vancomycin 0.016 mg/ml
N.D.
N.D.
-0.2
-0.3
-0.5
nitrogen source
L-Glutamic (N)
N.D.
N.D.
-0.1
-0.5
-0.3
stress
D-Cycloserine 0.032 mg/ml
N.D.
N.D.
-0.1
-0.1
-0.6
stress
benzoic 0.4 mg/ml
N.D.
N.D.
-0.3
-0.5
+0.1
stress
L-Lysine 200 mM
N.D.
N.D.
-0.2
-0.6
+0.2
radiation
Ionizing radiation, 319.06 Gy,
N.D.
N.D.
+0.2
-0.4
-0.1
stress
Chlorate 75 mM
N.D.
N.D.
-0.4
+0.3
-0.2
nutrient
L-tyrosine
N.D.
N.D.
-0.2
-0.3
+0.3
anaerobic
Nitrate/ lactate media with Nitrate 250mM
N.D.
N.D.
+0.0
-0.5
+0.4
stress
Lomefloxacin 0.0001 mM
N.D.
N.D.
+0.1
-0.6
+0.3
stress
Paraquat dichloride 0.015 mg/ml
N.D.
N.D.
+0.1
+0.2
-0.5
stress
nitrate 250 mM
N.D.
N.D.
-0.4
+0.3
+0.3
carbon source
D-Maltose (C)
N.D.
N.D.
+0.1
+0.5
-0.2
RCH2 grown on a colony of ecoli
N.D.
N.D.
-0.5
+0.7
+0.4
RCH2 grown on a colony of 8R2A
N.D.
N.D.
-0.3
+1.3
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
N.D.
+0.2
+0.5
+0.2
RCH2 grown on a colony of N2A2
N.D.
N.D.
-0.0
+0.7
+0.2
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
N.D.
N.D.
-0.0
+0.5
+0.5
RCH2 grown on a colony of N2F3
N.D.
N.D.
+0.5
+0.3
+0.0
RCH2 grown on a colony of N2C3
N.D.
N.D.
+0.0
+0.8
+0.2
RCH2 grown on a colony of ecoli
N.D.
N.D.
+0.1
+0.4
+0.5
RCH2 grown on a colony of Serratia
N.D.
N.D.
+0.4
+0.8
+0.4
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