Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2067 and Psest_2068 overlap by 4 nucleotidesPsest_2068 and Psest_2069 are separated by 115 nucleotidesPsest_2069 and Psest_2070 are separated by 10 nucleotidesPsest_2070 and Psest_2071 are separated by 209 nucleotides Psest_2067: Psest_2067 - ABC-type oligopeptide transport system, periplasmic component, at 2,193,344 to 2,195,230 _2067 Psest_2068: Psest_2068 - ABC-type oligopeptide transport system, periplasmic component, at 2,195,227 to 2,197,056 _2068 Psest_2069: Psest_2069 - HDOD domain., at 2,197,172 to 2,198,647 _2069 Psest_2070: Psest_2070 - FOG: LysM repeat, at 2,198,658 to 2,200,106 _2070 Psest_2071: Psest_2071 - hydroxyacylglutathione hydrolase, at 2,200,316 to 2,201,095 _2071
Group Condition Psest_2067 Psest_2068 Psest_2069 Psest_2070 Psest_2071
stress Def methylglyoxal 0.01 vol% -1.2 +0.2 +0.0 +0.1 -7.8
stress methylglyoxal 0.0016 vol% -1.2 -0.2 -0.1 -0.3 -6.4
stress nitrate 250 mM -2.9 -0.1 -0.4 -1.5 -0.7
metal limitation Lactate-nitrite; anaerobic; with copper; sample3 -4.2 -0.0 +0.0 -0.6 -0.1
stress Bacitracin 0.25 mg/ml -3.2 -0.3 +0.0 -1.5 +0.3
carbon source L-tyrosine (C) -2.8 -0.6 +0.1 -1.0 -0.2
stress Lactate-nitrate; anaerobic; copper stress sample1 -4.0 -0.0 +0.0 -0.4 +0.0
stress Def Carbenicillin 0.008 mg/ml -1.8 -0.7 -0.2 -1.0 -0.6
temperature LB 30C timecourse1 timepoint 3 -2.5 -0.3 -0.2 -0.8 -0.5
stress Anaerobic 500 uM Zinc chloride sample3 -3.9 -0.2 -0.0 -0.1 +0.1
stress A22 0.005 mg/ml -3.1 -1.4 +0.0 +0.0 +0.2
metal limitation Lactate-nitrite with YE; anaerobic; with copper; sample3 -3.9 -0.1 +0.1 -0.2 +0.0
temperature LB 26C sample1 -3.7 -0.1 -0.1 -0.1 -0.0
stress Def Cephalothin 0.04 mg/ml -2.5 -0.2 -0.2 -0.9 -0.2
stress Def Carbenicillin 0.02 mg/ml -1.9 -0.6 -0.6 -0.7 -0.0
stress A22 0.002 mg/ml -1.7 -1.4 -0.1 -0.3 -0.3
stress Lactate-nitrate; anaerobic sample1 -2.9 -0.2 -0.1 -0.3 -0.2
stress Lactate-nitrate; anaerobic; cadmium stress sample2 -3.7 -0.2 +0.0 +0.1 +0.2
stress Def Benzethonium chloride 0.008 mM -3.2 +0.2 +0.0 -0.5 +0.0
stress Bacitracin 0.25 mg/ml -1.6 -1.1 +0.1 -1.2 +0.3
RCH2 grown on a colony of N2F3 -3.1 +0.1 -0.3 +0.5 -0.3
stress Chlorite 0.06 mM -3.6 -0.5 +0.1 +0.6 +0.4
RCH2 grown on a colony of ecoli -3.3 +0.5 +0.2 +0.4 -0.2
stress L-Lysine 200 mM -3.0 -0.4 +0.2 +1.2 -0.1
stress Choline chloride 90 mM -3.1 -0.6 -0.0 +1.5 +0.6
stress Choline chloride 90 mM -1.7 -0.7 -0.0 +1.1 +0.2
stress L-Lysine 200 mM -2.1 -0.2 +0.3 +1.5 +0.1
stress Chlorate 75 mM +2.2 -0.4 -0.1 -1.1 -0.5
stress Spectinomycin 0.00625 mg/ml +1.9 +2.2 -0.5 -0.4 +0.1
stress Spectinomycin 0.00625 mg/ml +1.6 +2.4 +0.2 -0.6 +0.3
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