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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2067 and Psest_2068 overlap by 4 nucleotides
Psest_2068 and Psest_2069 are separated by 115 nucleotides
Psest_2069 and Psest_2070 are separated by 10 nucleotides
Psest_2070 and Psest_2071 are separated by 209 nucleotides
Psest_2067: Psest_2067 - ABC-type oligopeptide transport system, periplasmic component, at 2,193,344 to 2,195,230
_2067
Psest_2068: Psest_2068 - ABC-type oligopeptide transport system, periplasmic component, at 2,195,227 to 2,197,056
_2068
Psest_2069: Psest_2069 - HDOD domain., at 2,197,172 to 2,198,647
_2069
Psest_2070: Psest_2070 - FOG: LysM repeat, at 2,198,658 to 2,200,106
_2070
Psest_2071: Psest_2071 - hydroxyacylglutathione hydrolase, at 2,200,316 to 2,201,095
_2071
Group
Condition
Psest
_2067
Psest
_2068
Psest
_2069
Psest
_2070
Psest
_2071
stress
Def methylglyoxal 0.01 vol%
-1.2
+0.2
+0.0
+0.1
-7.8
stress
methylglyoxal 0.0016 vol%
-1.2
-0.2
-0.1
-0.3
-6.4
stress
nitrate 250 mM
-2.9
-0.1
-0.4
-1.5
-0.7
metal limitation
Lactate-nitrite; anaerobic; with copper; sample3
-4.2
-0.0
+0.0
-0.6
-0.1
stress
Bacitracin 0.25 mg/ml
-3.2
-0.3
+0.0
-1.5
+0.3
carbon source
L-tyrosine (C)
-2.8
-0.6
+0.1
-1.0
-0.2
stress
Lactate-nitrate; anaerobic; copper stress sample1
-4.0
-0.0
+0.0
-0.4
+0.0
stress
Def Carbenicillin 0.008 mg/ml
-1.8
-0.7
-0.2
-1.0
-0.6
temperature
LB 30C timecourse1 timepoint 3
-2.5
-0.3
-0.2
-0.8
-0.5
stress
Anaerobic 500 uM Zinc chloride sample3
-3.9
-0.2
-0.0
-0.1
+0.1
stress
A22 0.005 mg/ml
-3.1
-1.4
+0.0
+0.0
+0.2
metal limitation
Lactate-nitrite with YE; anaerobic; with copper; sample3
-3.9
-0.1
+0.1
-0.2
+0.0
temperature
LB 26C sample1
-3.7
-0.1
-0.1
-0.1
-0.0
stress
Def Cephalothin 0.04 mg/ml
-2.5
-0.2
-0.2
-0.9
-0.2
stress
Def Carbenicillin 0.02 mg/ml
-1.9
-0.6
-0.6
-0.7
-0.0
stress
A22 0.002 mg/ml
-1.7
-1.4
-0.1
-0.3
-0.3
stress
Lactate-nitrate; anaerobic sample1
-2.9
-0.2
-0.1
-0.3
-0.2
stress
Lactate-nitrate; anaerobic; cadmium stress sample2
-3.7
-0.2
+0.0
+0.1
+0.2
stress
Def Benzethonium chloride 0.008 mM
-3.2
+0.2
+0.0
-0.5
+0.0
stress
Bacitracin 0.25 mg/ml
-1.6
-1.1
+0.1
-1.2
+0.3
RCH2 grown on a colony of N2F3
-3.1
+0.1
-0.3
+0.5
-0.3
stress
Chlorite 0.06 mM
-3.6
-0.5
+0.1
+0.6
+0.4
RCH2 grown on a colony of ecoli
-3.3
+0.5
+0.2
+0.4
-0.2
stress
L-Lysine 200 mM
-3.0
-0.4
+0.2
+1.2
-0.1
stress
Choline chloride 90 mM
-3.1
-0.6
-0.0
+1.5
+0.6
stress
Choline chloride 90 mM
-1.7
-0.7
-0.0
+1.1
+0.2
stress
L-Lysine 200 mM
-2.1
-0.2
+0.3
+1.5
+0.1
stress
Chlorate 75 mM
+2.2
-0.4
-0.1
-1.1
-0.5
stress
Spectinomycin 0.00625 mg/ml
+1.9
+2.2
-0.5
-0.4
+0.1
stress
Spectinomycin 0.00625 mg/ml
+1.6
+2.4
+0.2
-0.6
+0.3
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