Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2064 and Psest_2065 are separated by 1 nucleotidesPsest_2065 and Psest_2066 are separated by 1 nucleotidesPsest_2066 and Psest_2067 are separated by 2 nucleotidesPsest_2067 and Psest_2068 overlap by 4 nucleotides Psest_2064: Psest_2064 - ABC-type uncharacterized transport system, duplicated ATPase component, at 2,189,584 to 2,191,245 _2064 Psest_2065: Psest_2065 - ABC-type uncharacterized transport system, permease component, at 2,191,247 to 2,192,266 _2065 Psest_2066: Psest_2066 - ABC-type uncharacterized transport system, permease component, at 2,192,268 to 2,193,341 _2066 Psest_2067: Psest_2067 - ABC-type oligopeptide transport system, periplasmic component, at 2,193,344 to 2,195,230 _2067 Psest_2068: Psest_2068 - ABC-type oligopeptide transport system, periplasmic component, at 2,195,227 to 2,197,056 _2068
Group Condition Psest_2064 Psest_2065 Psest_2066 Psest_2067 Psest_2068
stress Choline chloride 90 mM N.D. N.D. -3.4 -3.1 -0.6
stress Choline Lysine 20 mM N.D. N.D. -3.8 -3.3 +0.0
stress Chlorite 0.06 mM N.D. N.D. -2.8 -3.6 -0.5
stress A22 0.005 mg/ml N.D. N.D. -1.3 -3.1 -1.4
stress Choline chloride 90 mM N.D. N.D. -3.3 -1.7 -0.7
stress Def Cephalothin 0.04 mg/ml N.D. N.D. -2.4 -2.5 -0.2
stress Anaerobic 500 uM Zinc chloride sample3 N.D. N.D. -0.8 -3.9 -0.2
RCH2 grown on a colony of Serratia N.D. N.D. -2.7 -2.4 +0.1
stress L-Lysine 200 mM N.D. N.D. -1.5 -3.0 -0.4
RCH2 grown on a colony of N2F3 N.D. N.D. -1.6 -3.1 +0.1
stress A22 0.002 mg/ml N.D. N.D. -1.2 -1.7 -1.4
stress Choline Lysine 20 mM N.D. N.D. -2.7 -1.6 +0.2
metal limitation Lactate-nitrite; anaerobic; with copper; sample3 N.D. N.D. +0.7 -4.2 -0.0
metal limitation Lactate-nitrite with YE; anaerobic; with copper; sample3 N.D. N.D. +0.6 -3.9 -0.1
temperature LB 26C sample1 N.D. N.D. +1.4 -3.7 -0.1
RCH2 grown on a colony of ecoli N.D. N.D. +0.6 -3.3 +0.5
RCH2 grown on a colony of N2A2 N.D. N.D. +2.0 -2.9 -0.5
stress Def Benzethonium chloride 0.008 mM N.D. N.D. +1.7 -3.2 +0.2
stress nitrate 250 mM N.D. N.D. +2.4 -2.9 -0.1
anaerobic nitrate reduction - anaerobic N.D. N.D. +1.9 -2.3 +0.3
temperature LB 30C timecourse2 timepoint 2 N.D. N.D. +3.0 -3.0 +0.0
stress Gentamicin 0.0016 mg/ml N.D. N.D. +3.9 -1.2 -0.0
radiation Ionizing radiation, 319.06 Gy, N.D. N.D. +4.6 -1.5 -0.4
nitrogen source L-Valine (N) N.D. N.D. +3.9 -1.1 +0.2
nitrogen source L-Isoleucine (N) N.D. N.D. +4.3 -0.5 +0.5
carbon source L-Alanine (C) N.D. N.D. +4.6 -0.1 +0.0
carbon source L-Alanine (C) N.D. N.D. +4.6 +0.5 +0.2
radiation Ionizing radiation, 319.06 Gy, N.D. N.D. +5.2 +0.0 +0.2
stress Spectinomycin 0.00625 mg/ml N.D. N.D. +4.4 +1.9 +2.2
stress Spectinomycin 0.00625 mg/ml N.D. N.D. +4.7 +1.6 +2.4
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