Fitness for 5 genes in Pseudomonas stutzeri RCH2

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 424 experiments or choose conditions or try the comparative fitness browser

500 ntPsest_2060 and Psest_2061 are separated by 90 nucleotidesPsest_2061 and Psest_2062 are separated by 280 nucleotidesPsest_2062 and Psest_2063 are separated by 63 nucleotidesPsest_2063 and Psest_2064 overlap by 20 nucleotides Psest_2060: Psest_2060 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 2,184,995 to 2,186,773 _2060 Psest_2061: Psest_2061 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 2,186,864 to 2,187,700 _2061 Psest_2062: Psest_2062 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,187,981 to 2,188,745 _2062 Psest_2063: Psest_2063 - Enoyl-[acyl-carrier-protein] reductase (NADH), at 2,188,809 to 2,189,603 _2063 Psest_2064: Psest_2064 - ABC-type uncharacterized transport system, duplicated ATPase component, at 2,189,584 to 2,191,245 _2064
Group Condition Psest_2060 Psest_2061 Psest_2062 Psest_2063 Psest_2064
carbon source Ethanol (C) -2.0 +0.0 +0.3 N.D. N.D.
carbon source Ethanol (C) -1.5 +0.2 -0.0 N.D. N.D.
stress 1-ethyl-3-methylimidazolium acetate 40 mM -0.1 -0.9 -0.2 N.D. N.D.
vitamin No vitamins t1 +0.4 -0.4 -1.1 N.D. N.D.
stress Chlorate 75 mM +0.2 -1.9 +0.5 N.D. N.D.
stress Nickel (II) chloride 0.8 mM +0.3 -0.7 -0.7 N.D. N.D.
stress Zinc 0.12 mM +0.3 -0.6 -0.7 N.D. N.D.
stress Doxycycline hyclate 0.0002 mg/ml +0.2 -0.5 -0.6 N.D. N.D.
carbon source L-Alanine (C) +0.3 -0.2 -0.9 N.D. N.D.
stress Cholin acetate 40 mM -0.1 -0.9 +0.3 N.D. N.D.
carbon source L-tyrosine (C) -0.4 +0.3 -0.7 N.D. N.D.
stress Fusidic 0.016 mg/ml +0.1 +0.4 -0.8 N.D. N.D.
vitamin No vitamins t2 +0.4 +0.2 -0.9 N.D. N.D.
anaerobic Nitrite/ lactate media with Nitrite 20mM -0.1 -0.9 +0.7 N.D. N.D.
stress L-Lysine 200 mM +0.1 -0.6 +0.5 N.D. N.D.
carbon source L-Lactate (C) +0.2 +0.5 -0.4 N.D. N.D.
stress Lactate-nitrate; anaerobic; copper stress sample3 -0.0 +0.9 -0.4 N.D. N.D.
stress Spectinomycin 0.00625 mg/ml -0.2 -0.1 +0.8 N.D. N.D.
RCH2 grown on a colony of N2A2 +0.3 +0.8 -0.5 N.D. N.D.
stress A22 0.002 mg/ml +0.2 -0.1 +0.8 N.D. N.D.
stress Furfuryl Alcohol 0.05 vol% +0.6 -0.4 +0.7 N.D. N.D.
stress Def Carbenicillin 0.008 mg/ml +0.4 +0.9 -0.1 N.D. N.D.
vitamin With vitamins t1 +0.2 +0.7 +0.3 N.D. N.D.
stress Nalidixic 0.00390625 mg/ml +0.3 +0.7 +0.2 N.D. N.D.
stress Cobalt chloride 0.06 mM +0.1 +0.8 +0.3 N.D. N.D.
stress Def 2-Furfuraldehyde 0.032 vol% +0.5 +0.6 +0.1 N.D. N.D.
stress Nalidixic 0.00390625 mg/ml -0.2 +0.9 +0.6 N.D. N.D.
RCH2 grown on a colony of Serratia +0.6 +0.6 +0.2 N.D. N.D.
stress Def Benzalkonium Chloride 0.002 mg/ml +1.3 +0.5 -0.1 N.D. N.D.
RCH2 grown on a colony of N2C3 +0.2 +0.3 +1.2 N.D. N.D.
remove
Psest_2060
plot		 remove
Psest_2061
plot		 remove
Psest_2062		 remove
Psest_2063
plot		 remove
Psest_2064
plot