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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_2059 and Psest_2060 are separated by 278 nucleotides
Psest_2060 and Psest_2061 are separated by 90 nucleotides
Psest_2061 and Psest_2062 are separated by 280 nucleotides
Psest_2062 and Psest_2063 are separated by 63 nucleotides
Psest_2059: Psest_2059 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 2,183,478 to 2,184,716
_2059
Psest_2060: Psest_2060 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 2,184,995 to 2,186,773
_2060
Psest_2061: Psest_2061 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 2,186,864 to 2,187,700
_2061
Psest_2062: Psest_2062 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,187,981 to 2,188,745
_2062
Psest_2063: Psest_2063 - Enoyl-[acyl-carrier-protein] reductase (NADH), at 2,188,809 to 2,189,603
_2063
Group
Condition
Psest
_2059
Psest
_2060
Psest
_2061
Psest
_2062
Psest
_2063
stress
Chlorate 75 mM
-0.7
+0.2
-1.9
+0.5
N.D.
carbon source
Ethanol (C)
+0.0
-2.0
+0.0
+0.3
N.D.
vitamin
No vitamins t1
-0.4
+0.4
-0.4
-1.1
N.D.
stress
Zinc 0.12 mM
-0.3
+0.3
-0.6
-0.7
N.D.
stress
Doxycycline hyclate 0.0002 mg/ml
-0.3
+0.2
-0.5
-0.6
N.D.
carbon source
Ethanol (C)
+0.1
-1.5
+0.2
-0.0
N.D.
stress
Nickel (II) chloride 0.8 mM
+0.1
+0.3
-0.7
-0.7
N.D.
carbon source
L-tyrosine (C)
-0.1
-0.4
+0.3
-0.7
N.D.
stress
Cholin acetate 40 mM
-0.0
-0.1
-0.9
+0.3
N.D.
vitamin
No vitamins t2
-0.5
+0.4
+0.2
-0.9
N.D.
carbon source
L-Alanine (C)
+0.1
+0.3
-0.2
-0.9
N.D.
RCH2 grown on a colony of 8R2A
-0.4
+0.1
+0.2
-0.6
N.D.
stress
benzoic 0.4 mg/ml
+0.4
+0.0
-0.9
-0.1
N.D.
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.4
-0.1
+0.1
-0.8
N.D.
RCH2 grown on a colony of N2F3
-0.7
+0.1
+0.7
-0.3
N.D.
anaerobic
Nitrite/ lactate media with Nitrite 20mM
+0.1
-0.1
-0.9
+0.7
N.D.
stress
syringaldehyde 4 mM
-0.6
-0.1
+0.6
+0.2
N.D.
stress
Spectinomycin 0.00625 mg/ml
-0.2
-0.2
-0.1
+0.8
N.D.
RCH2 grown on a colony of N2A2
-0.0
+0.3
+0.8
-0.5
N.D.
stress
Carbenicillin 0.008 mg/ml
+0.6
-0.0
-0.4
+0.6
N.D.
carbon source
L-Lactate (C)
+0.4
+0.2
+0.5
-0.4
N.D.
stress
Nalidixic 0.00390625 mg/ml
-0.6
-0.2
+0.9
+0.6
N.D.
vitamin
With vitamins t1
-0.4
+0.2
+0.7
+0.3
N.D.
stress
Lactate-nitrate; anaerobic; copper stress sample3
+0.3
-0.0
+0.9
-0.4
N.D.
stress
Furfuryl Alcohol 0.05 vol%
-0.0
+0.6
-0.4
+0.7
N.D.
RCH2 grown on a colony of Serratia
-0.2
+0.6
+0.6
+0.2
N.D.
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.1
+0.5
+0.6
+0.1
N.D.
stress
Def Carbenicillin 0.008 mg/ml
+0.3
+0.4
+0.9
-0.1
N.D.
RCH2 grown on a colony of N2C3
+0.3
+0.2
+0.3
+1.2
N.D.
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.8
+1.3
+0.5
-0.1
N.D.
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