Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2058 and Psest_2059 are separated by 5 nucleotidesPsest_2059 and Psest_2060 are separated by 278 nucleotidesPsest_2060 and Psest_2061 are separated by 90 nucleotidesPsest_2061 and Psest_2062 are separated by 280 nucleotides Psest_2058: Psest_2058 - Zn-dependent hydrolases, including glyoxylases, at 2,182,543 to 2,183,472 _2058 Psest_2059: Psest_2059 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 2,183,478 to 2,184,716 _2059 Psest_2060: Psest_2060 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 2,184,995 to 2,186,773 _2060 Psest_2061: Psest_2061 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 2,186,864 to 2,187,700 _2061 Psest_2062: Psest_2062 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,187,981 to 2,188,745 _2062
Group Condition Psest_2058 Psest_2059 Psest_2060 Psest_2061 Psest_2062
stress Chlorate 75 mM -0.4 -0.7 +0.2 -1.9 +0.5
carbon source Ethanol (C) +0.2 +0.0 -2.0 +0.0 +0.3
stress Nickel (II) chloride 0.8 mM -0.4 +0.1 +0.3 -0.7 -0.7
stress nitrate 250 mM -1.0 -0.0 +0.0 +0.3 -0.6
stress Doxycycline hyclate 0.0002 mg/ml -0.0 -0.3 +0.2 -0.5 -0.6
stress Zinc 0.12 mM +0.1 -0.3 +0.3 -0.6 -0.7
vitamin No vitamins t1 +0.3 -0.4 +0.4 -0.4 -1.1
stress Cholin acetate 40 mM -0.4 -0.0 -0.1 -0.9 +0.3
carbon source Ethanol (C) +0.2 +0.1 -1.5 +0.2 -0.0
RCH2 grown on a colony of N2F3 -0.7 -0.7 +0.1 +0.7 -0.3
temperature LB 26C sample1 -0.3 -0.3 -0.1 -0.5 +0.4
vitamin No vitamins t2 +0.3 -0.5 +0.4 +0.2 -0.9
stress benzoic 0.4 mg/ml +0.2 +0.4 +0.0 -0.9 -0.1
anaerobic Nitrite/ lactate media with Nitrite 20mM +0.0 +0.1 -0.1 -0.9 +0.7
stress 1-ethyl-3-methylimidazolium acetate 20 mM +0.2 +0.4 -0.1 +0.1 -0.8
stress Carbenicillin 0.008 mg/ml -0.4 +0.6 -0.0 -0.4 +0.6
stress L-Lysine 200 mM +0.5 +0.1 +0.1 -0.6 +0.5
RCH2 grown on a colony of N2A2 +0.1 -0.0 +0.3 +0.8 -0.5
stress Lactate-nitrate; anaerobic; copper stress sample3 -0.1 +0.3 -0.0 +0.9 -0.4
stress syringaldehyde 4 mM +0.6 -0.6 -0.1 +0.6 +0.2
RCH2 grown on a colony of Serratia +0.5 +0.2 +0.4 -0.5 +0.2
carbon source L-Lactate (C) +0.1 +0.4 +0.2 +0.5 -0.4
stress Nalidixic 0.00390625 mg/ml +0.2 -0.6 -0.2 +0.9 +0.6
stress Furfuryl Alcohol 0.05 vol% +0.2 -0.0 +0.6 -0.4 +0.7
RCH2 grown on a colony of Serratia -0.1 -0.2 +0.6 +0.6 +0.2
nitrogen source Putrescine (N) +0.6 +0.0 +0.2 +0.4 +0.4
stress acetate 80 mM +0.6 +0.3 +0.1 +0.7 +0.0
RCH2 grown on a colony of N2C3 -0.2 +0.3 +0.2 +0.3 +1.2
stress Def Carbenicillin 0.008 mg/ml +0.3 +0.3 +0.4 +0.9 -0.1
stress Def Benzalkonium Chloride 0.002 mg/ml +0.5 +0.8 +1.3 +0.5 -0.1
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