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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2056 and Psest_2057 are separated by 50 nucleotides
Psest_2057 and Psest_2058 are separated by 47 nucleotides
Psest_2058 and Psest_2059 are separated by 5 nucleotides
Psest_2059 and Psest_2060 are separated by 278 nucleotides
Psest_2056: Psest_2056 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,180,784 to 2,181,698
_2056
Psest_2057: Psest_2057 - Predicted secreted protein, at 2,181,749 to 2,182,495
_2057
Psest_2058: Psest_2058 - Zn-dependent hydrolases, including glyoxylases, at 2,182,543 to 2,183,472
_2058
Psest_2059: Psest_2059 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 2,183,478 to 2,184,716
_2059
Psest_2060: Psest_2060 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 2,184,995 to 2,186,773
_2060
Group
Condition
Psest
_2056
Psest
_2057
Psest
_2058
Psest
_2059
Psest
_2060
carbon source
Ethanol (C)
-1.6
-0.0
+0.2
+0.0
-2.0
carbon source
Ethanol (C)
-1.1
+0.0
+0.2
+0.1
-1.5
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.4
-0.7
-0.0
-0.5
-0.1
RCH2 grown on a colony of N2A2
-0.4
-0.5
-0.2
-0.3
-0.2
temperature
LB 26C sample1
-0.5
-0.2
-0.3
-0.3
-0.1
RCH2 grown on a colony of N2F3
-0.2
+0.0
-0.7
-0.7
+0.1
stress
nitrate 250 mM
-0.5
-0.0
-1.0
-0.0
+0.0
stress
Benzalkonium Chloride 0.002 mg/ml
-0.3
-0.7
-0.3
+0.1
+0.1
stress
Chlorate 75 mM
-0.1
+0.4
-0.4
-0.7
+0.2
vitamin
With vitamins t1
+0.3
-0.6
-0.1
-0.4
+0.2
RCH2 grown on a colony of ecoli
-0.3
-0.7
+0.3
+0.1
+0.1
RCH2 grown on a colony of Serratia
-0.0
-0.7
-0.1
-0.2
+0.6
stress
Zinc 0.12 mM
+0.4
-0.8
+0.1
-0.3
+0.3
vitamin
No vitamins t2
+0.1
-0.4
+0.3
-0.5
+0.4
stress
Nalidixic 0.00390625 mg/ml
+0.7
-1.0
-0.1
-0.1
+0.3
carbon source
L-tyrosine (C)
-0.3
+0.9
+0.0
-0.1
-0.4
RCH2 grown on a colony of ecoli
-0.1
+0.6
-0.4
-0.1
+0.3
stress
Nalidixic 0.00390625 mg/ml
-0.2
+1.3
+0.2
-0.6
-0.2
stress
Carbenicillin 0.008 mg/ml
+0.4
+0.1
-0.4
+0.6
-0.0
stress
Def Benzethonium chloride 0.008 mM
+0.3
-0.6
+0.1
+0.5
+0.4
stress
Carbenicillin 0.008 mg/ml
+0.5
+0.5
-0.6
+0.2
+0.1
stress
Doxycycline hyclate 0.0002 mg/ml
+0.4
+0.7
-0.0
-0.3
+0.2
RCH2 grown on a colony of Serratia
-0.3
+0.2
+0.5
+0.2
+0.4
stress
Carbenicillin 0.0065 mg/ml
-0.6
+0.9
+0.4
+0.2
+0.2
stress
Def Carbenicillin 0.008 mg/ml
+0.4
-0.1
+0.3
+0.3
+0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.6
+0.5
+0.3
+0.2
-0.2
stress
Furfuryl Alcohol 0.05 vol%
+0.3
+0.3
+0.2
-0.0
+0.6
stress
Thallium(I) acetate 0.09 mg/ml
+0.4
+0.3
+0.3
+0.4
+0.2
RCH2 grown on a colony of N2F3
+0.7
+0.4
+0.5
-0.2
+0.3
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.0
+0.1
+0.5
+0.8
+1.3
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