Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2054 and Psest_2055 are separated by 308 nucleotidesPsest_2055 and Psest_2056 overlap by 1 nucleotidesPsest_2056 and Psest_2057 are separated by 50 nucleotidesPsest_2057 and Psest_2058 are separated by 47 nucleotides Psest_2054: Psest_2054 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 2,178,167 to 2,180,038 _2054 Psest_2055: Psest_2055 - cytochrome c550 (from data), at 2,180,347 to 2,180,784 _2055 Psest_2056: Psest_2056 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,180,784 to 2,181,698 _2056 Psest_2057: Psest_2057 - Predicted secreted protein, at 2,181,749 to 2,182,495 _2057 Psest_2058: Psest_2058 - Zn-dependent hydrolases, including glyoxylases, at 2,182,543 to 2,183,472 _2058
Group Condition Psest_2054 Psest_2055 Psest_2056 Psest_2057 Psest_2058
carbon source Ethanol (C) -1.8 -4.4 -1.6 -0.0 +0.2
carbon source Ethanol (C) -1.6 -3.8 -1.1 +0.0 +0.2
RCH2 grown on a colony of N2A2 -0.1 -0.8 -0.4 -0.5 -0.2
stress Benzalkonium Chloride 0.002 mg/ml -0.4 -0.3 -0.3 -0.7 -0.3
stress Polymyxin B sulfate 0.0001 mg/ml -0.3 -0.5 -0.4 -0.7 -0.0
stress nitrate 250 mM -0.1 -0.4 -0.5 -0.0 -1.0
stress Def Chloride 400 mM -0.3 -0.5 -0.3 -0.6 -0.1
stress Def Cephalothin 0.04 mg/ml -0.3 -0.4 -0.3 -0.4 -0.3
stress Nickel (II) chloride 0.8 mM -0.2 -1.0 +0.1 -0.3 -0.4
RCH2 grown on a colony of N2F3 -0.3 -0.5 -0.2 +0.0 -0.7
stress Def Thallium(I) acetate 0.125 mg/ml +0.1 -0.5 -0.1 -0.6 -0.3
anaerobic Nitrate/ lactate media with Nitrate 20mM -0.1 -0.5 -0.2 -0.7 +0.3
stress Nalidixic 0.00390625 mg/ml -0.2 -0.4 +0.7 -1.0 -0.1
stress D-Cycloserine 0.032 mg/ml -0.3 +0.3 +0.2 -0.2 -0.6
RCH2 grown on a colony of ecoli -0.0 +0.5 -0.3 -0.7 +0.3
carbon source propionate (C) -0.4 +0.6 -0.1 -0.3 +0.2
stress Cobalt chloride 0.07 mM -0.2 -0.6 +0.4 +0.2 +0.1
stress Lactate-nitrate; anaerobic; cadmium stress sample2 +0.2 +0.4 -0.4 -0.4 +0.3
stress nitrite 2.5 mM +0.1 +0.8 -0.3 -0.2 -0.3
stress Lactate-nitrate; anaerobic sample1 -0.1 -0.4 -0.2 +0.9 -0.2
vitamin With vitamins t1 +0.2 +0.5 +0.3 -0.6 -0.1
stress Carbenicillin 0.008 mg/ml +0.3 -0.3 +0.5 +0.5 -0.6
stress Carbenicillin 0.0065 mg/ml +0.1 -0.3 -0.6 +0.9 +0.4
nitrogen source L-Citrulline (N) -0.3 +0.6 +0.1 +0.3 +0.3
RCH2 grown on a colony of Serratia +0.2 +0.4 -0.3 +0.2 +0.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -0.1 +0.1 +0.6 +0.5 +0.3
stress syringaldehyde 3 mM +0.1 +0.9 +0.2 -0.2 +0.5
stress Nalidixic 0.00390625 mg/ml -0.0 +0.6 -0.2 +1.3 +0.2
RCH2 grown on a colony of N2F3 +0.6 -0.3 +0.7 +0.4 +0.5
stress Def Benzalkonium Chloride 0.002 mg/ml +0.6 +1.1 +1.0 +0.1 +0.5
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