Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2053 and Psest_2054 are separated by 165 nucleotidesPsest_2054 and Psest_2055 are separated by 308 nucleotidesPsest_2055 and Psest_2056 overlap by 1 nucleotidesPsest_2056 and Psest_2057 are separated by 50 nucleotides Psest_2053: Psest_2053 - Uncharacterized low-complexity proteins, at 2,177,357 to 2,178,001 _2053 Psest_2054: Psest_2054 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 2,178,167 to 2,180,038 _2054 Psest_2055: Psest_2055 - cytochrome c550 (from data), at 2,180,347 to 2,180,784 _2055 Psest_2056: Psest_2056 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,180,784 to 2,181,698 _2056 Psest_2057: Psest_2057 - Predicted secreted protein, at 2,181,749 to 2,182,495 _2057
Group Condition Psest_2053 Psest_2054 Psest_2055 Psest_2056 Psest_2057
carbon source Ethanol (C) -1.7 -1.8 -4.4 -1.6 -0.0
carbon source Ethanol (C) -1.4 -1.6 -3.8 -1.1 +0.0
nitrogen source L-Glutamic (N) -1.9 -0.0 -0.1 -0.1 -0.2
stress Benzalkonium Chloride 0.002 mg/ml -0.3 -0.4 -0.3 -0.3 -0.7
stress Polymyxin B sulfate 0.0001 mg/ml -0.0 -0.3 -0.5 -0.4 -0.7
RCH2 grown on a colony of N2A2 -0.1 -0.1 -0.8 -0.4 -0.5
stress Nickel (II) chloride 0.8 mM -0.4 -0.2 -1.0 +0.1 -0.3
stress Def Chlorate 40 mM -0.7 -0.3 +0.0 -0.3 -0.5
stress Def Chloride 400 mM +0.2 -0.3 -0.5 -0.3 -0.6
stress Nalidixic 0.00390625 mg/ml -0.5 -0.2 -0.4 +0.7 -1.0
stress Chlorate 75 mM -1.4 -0.3 +0.2 -0.1 +0.4
anaerobic Nitrate/ lactate media with Nitrate 20mM +0.4 -0.1 -0.5 -0.2 -0.7
stress 1-ethyl-3-methylimidazolium acetate 40 mM -0.6 +0.1 +0.5 -0.3 -0.3
stress Def Thallium(I) acetate 0.125 mg/ml +0.6 +0.1 -0.5 -0.1 -0.6
stress Carbenicillin 0.0065 mg/ml -0.2 +0.1 -0.3 -0.6 +0.9
vitamin With vitamins t1 -0.6 +0.2 +0.5 +0.3 -0.6
stress Carbenicillin 0.008 mg/ml -1.1 +0.3 -0.3 +0.5 +0.5
stress Zinc 0.12 mM +0.4 +0.1 -0.1 +0.4 -0.8
stress Lactate-nitrate; anaerobic sample1 -0.3 -0.1 -0.4 -0.2 +0.9
RCH2 grown on a colony of ecoli +0.6 -0.0 +0.5 -0.3 -0.7
anaerobic Nitrate/ lactate media with Nitrate 250mM +0.6 -0.0 -0.5 -0.2 +0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -0.7 -0.1 +0.1 +0.6 +0.5
temperature LB 30C timecourse2 timepoint 2 -0.6 -0.1 +0.3 +0.5 +0.3
stress Lactate-nitrate; anaerobic; cadmium stress sample2 +0.8 +0.2 +0.4 -0.4 -0.4
stress Choline chloride 90 mM +0.3 +0.1 +0.6 +0.1 -0.6
RCH2 grown on a colony of Serratia +0.6 +0.2 +0.4 -0.3 +0.2
stress Nalidixic 0.00390625 mg/ml -0.3 -0.0 +0.6 -0.2 +1.3
RCH2 grown on a colony of 8R2A +0.7 -0.2 +0.2 +0.3 +0.5
RCH2 grown on a colony of N2F3 +0.8 +0.6 -0.3 +0.7 +0.4
stress Def Benzalkonium Chloride 0.002 mg/ml +0.1 +0.6 +1.1 +1.0 +0.1
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