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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2053 and Psest_2054 are separated by 165 nucleotides
Psest_2054 and Psest_2055 are separated by 308 nucleotides
Psest_2055 and Psest_2056 overlap by 1 nucleotides
Psest_2056 and Psest_2057 are separated by 50 nucleotides
Psest_2053: Psest_2053 - Uncharacterized low-complexity proteins, at 2,177,357 to 2,178,001
_2053
Psest_2054: Psest_2054 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 2,178,167 to 2,180,038
_2054
Psest_2055: Psest_2055 - cytochrome c550
(from data)
, at 2,180,347 to 2,180,784
_2055
Psest_2056: Psest_2056 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,180,784 to 2,181,698
_2056
Psest_2057: Psest_2057 - Predicted secreted protein, at 2,181,749 to 2,182,495
_2057
Group
Condition
Psest
_2053
Psest
_2054
Psest
_2055
Psest
_2056
Psest
_2057
carbon source
Ethanol (C)
-1.7
-1.8
-4.4
-1.6
-0.0
carbon source
Ethanol (C)
-1.4
-1.6
-3.8
-1.1
+0.0
nitrogen source
L-Glutamic (N)
-1.9
-0.0
-0.1
-0.1
-0.2
stress
Benzalkonium Chloride 0.002 mg/ml
-0.3
-0.4
-0.3
-0.3
-0.7
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.0
-0.3
-0.5
-0.4
-0.7
RCH2 grown on a colony of N2A2
-0.1
-0.1
-0.8
-0.4
-0.5
stress
Nickel (II) chloride 0.8 mM
-0.4
-0.2
-1.0
+0.1
-0.3
stress
Def Chlorate 40 mM
-0.7
-0.3
+0.0
-0.3
-0.5
stress
Def Chloride 400 mM
+0.2
-0.3
-0.5
-0.3
-0.6
stress
Nalidixic 0.00390625 mg/ml
-0.5
-0.2
-0.4
+0.7
-1.0
stress
Chlorate 75 mM
-1.4
-0.3
+0.2
-0.1
+0.4
anaerobic
Nitrate/ lactate media with Nitrate 20mM
+0.4
-0.1
-0.5
-0.2
-0.7
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.6
+0.1
+0.5
-0.3
-0.3
stress
Def Thallium(I) acetate 0.125 mg/ml
+0.6
+0.1
-0.5
-0.1
-0.6
stress
Carbenicillin 0.0065 mg/ml
-0.2
+0.1
-0.3
-0.6
+0.9
vitamin
With vitamins t1
-0.6
+0.2
+0.5
+0.3
-0.6
stress
Carbenicillin 0.008 mg/ml
-1.1
+0.3
-0.3
+0.5
+0.5
stress
Zinc 0.12 mM
+0.4
+0.1
-0.1
+0.4
-0.8
stress
Lactate-nitrate; anaerobic sample1
-0.3
-0.1
-0.4
-0.2
+0.9
RCH2 grown on a colony of ecoli
+0.6
-0.0
+0.5
-0.3
-0.7
anaerobic
Nitrate/ lactate media with Nitrate 250mM
+0.6
-0.0
-0.5
-0.2
+0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.7
-0.1
+0.1
+0.6
+0.5
temperature
LB 30C timecourse2 timepoint 2
-0.6
-0.1
+0.3
+0.5
+0.3
stress
Lactate-nitrate; anaerobic; cadmium stress sample2
+0.8
+0.2
+0.4
-0.4
-0.4
stress
Choline chloride 90 mM
+0.3
+0.1
+0.6
+0.1
-0.6
RCH2 grown on a colony of Serratia
+0.6
+0.2
+0.4
-0.3
+0.2
stress
Nalidixic 0.00390625 mg/ml
-0.3
-0.0
+0.6
-0.2
+1.3
RCH2 grown on a colony of 8R2A
+0.7
-0.2
+0.2
+0.3
+0.5
RCH2 grown on a colony of N2F3
+0.8
+0.6
-0.3
+0.7
+0.4
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.1
+0.6
+1.1
+1.0
+0.1
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