Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2052 and Psest_2053 are separated by 131 nucleotidesPsest_2053 and Psest_2054 are separated by 165 nucleotidesPsest_2054 and Psest_2055 are separated by 308 nucleotidesPsest_2055 and Psest_2056 overlap by 1 nucleotides Psest_2052: Psest_2052 - PAS domain S-box, at 2,175,909 to 2,177,225 _2052 Psest_2053: Psest_2053 - Uncharacterized low-complexity proteins, at 2,177,357 to 2,178,001 _2053 Psest_2054: Psest_2054 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 2,178,167 to 2,180,038 _2054 Psest_2055: Psest_2055 - cytochrome c550 (from data), at 2,180,347 to 2,180,784 _2055 Psest_2056: Psest_2056 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,180,784 to 2,181,698 _2056
Group Condition Psest_2052 Psest_2053 Psest_2054 Psest_2055 Psest_2056
carbon source Ethanol (C) +0.2 -1.7 -1.8 -4.4 -1.6
carbon source Ethanol (C) +0.3 -1.4 -1.6 -3.8 -1.1
nitrogen source L-Glutamic (N) -0.1 -1.9 -0.0 -0.1 -0.1
stress nitrate 250 mM -0.4 -0.5 -0.1 -0.4 -0.5
stress Benzalkonium Chloride 0.002 mg/ml -0.5 -0.3 -0.4 -0.3 -0.3
stress Nickel (II) chloride 0.8 mM -0.1 -0.4 -0.2 -1.0 +0.1
stress Def Chlorate 40 mM -0.3 -0.7 -0.3 +0.0 -0.3
nitrogen source L-Isoleucine (N) -0.3 -0.7 -0.1 -0.3 -0.2
stress Chlorate 75 mM -0.1 -1.4 -0.3 +0.2 -0.1
stress Carbenicillin 0.0065 mg/ml -0.4 -0.2 +0.1 -0.3 -0.6
stress Carbenicillin 0.008 mg/ml -0.5 -1.1 +0.3 -0.3 +0.5
stress Chloride 200 mM +0.4 -0.1 -0.2 -0.5 -0.3
stress 1-ethyl-3-methylimidazolium acetate 40 mM -0.4 -0.6 +0.1 +0.5 -0.3
stress Cobalt chloride 0.07 mM -0.3 +0.3 -0.2 -0.6 +0.4
RCH2 grown on a colony of N2C3 +0.3 +0.3 -0.7 -0.2 -0.2
stress A22 0.005 mg/ml -0.2 -0.6 +0.2 +0.5 -0.2
stress Nalidixic 0.00390625 mg/ml +0.2 -0.5 -0.2 -0.4 +0.7
stress sodium fluoride 8.5 mM +0.2 -0.8 +0.1 +0.6 -0.1
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +0.3 -0.7 -0.1 +0.1 +0.6
stress 5-Hydroxymethylfurfural 5 mM +0.5 -0.4 -0.1 +0.4 -0.3
vitamin With vitamins t1 -0.1 -0.6 +0.2 +0.5 +0.3
temperature LB 30C timecourse2 timepoint 2 +0.2 -0.6 -0.1 +0.3 +0.5
RCH2 grown on a colony of Serratia -0.4 +0.6 +0.2 +0.4 -0.3
stress Paraquat dichloride 0.015 mg/ml +0.6 +0.4 -0.3 +0.4 -0.3
stress perchlorate 12.5 mM +0.2 +0.6 -0.2 +0.6 -0.2
stress Lactate-nitrate; anaerobic; cadmium stress sample2 +0.3 +0.8 +0.2 +0.4 -0.4
RCH2 grown on a colony of 8R2A +0.5 +0.7 -0.2 +0.2 +0.3
stress Benzethonium chloride 0.01 mM +0.1 +0.8 -0.0 +0.6 +0.1
RCH2 grown on a colony of N2F3 +0.3 +0.8 +0.6 -0.3 +0.7
stress Def Benzalkonium Chloride 0.002 mg/ml -0.2 +0.1 +0.6 +1.1 +1.0
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