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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2048 and Psest_2049 are separated by 359 nucleotides
Psest_2049 and Psest_2050 are separated by 239 nucleotides
Psest_2050 and Psest_2051 are separated by 14 nucleotides
Psest_2051 and Psest_2052 are separated by 117 nucleotides
Psest_2048: Psest_2048 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,169,900 to 2,170,559
_2048
Psest_2049: Psest_2049 - Outer membrane receptor proteins, mostly Fe transport, at 2,170,919 to 2,173,219
_2049
Psest_2050: Psest_2050 - Arabinose efflux permease, at 2,173,459 to 2,174,622
_2050
Psest_2051: Psest_2051 - Ribonuclease D, at 2,174,637 to 2,175,791
_2051
Psest_2052: Psest_2052 - PAS domain S-box, at 2,175,909 to 2,177,225
_2052
Group
Condition
Psest
_2048
Psest
_2049
Psest
_2050
Psest
_2051
Psest
_2052
carbon source
Ethanol (C)
-2.7
+0.3
+0.1
-0.2
+0.2
carbon source
Ethanol (C)
-2.9
+0.4
+0.1
-0.1
+0.3
stress
Thallium(I) acetate 0.09 mg/ml
-1.2
-0.2
+0.1
-0.4
-0.3
RCH2 grown on a colony of N2F3
-0.8
-0.2
-0.4
-0.3
-0.4
RCH2 grown on a colony of Serratia
-0.6
+0.2
-0.3
-0.9
-0.4
stress
Vancomycin 0.016 mg/ml
-0.9
+0.2
-0.4
-0.0
-0.3
stress
Def Phosphomycin 0.125 mg/ml
-0.4
+0.3
-1.5
+0.2
-0.0
RCH2 grown on a colony of N2F3
-1.4
-0.1
+0.5
-0.3
+0.3
stress
Doxycycline hyclate 0.0002 mg/ml
-0.9
+0.1
+0.3
-0.3
-0.1
stress
Paraquat dichloride 0.015 mg/ml
-0.5
-0.2
-0.8
-0.1
+0.6
RCH2 grown on a colony of N2C3
-0.7
+0.5
-0.0
-0.3
+0.3
RCH2 grown on a colony of Serratia
+1.0
-0.3
-0.4
-0.2
+0.4
stress
Thallium(I) acetate 0.1 mg/ml
+0.7
-0.3
+0.4
-0.4
+0.2
stress
Phosphomycin 0.012 mg/ml
-0.3
-0.5
+1.1
+0.3
+0.0
stress
Def Carbenicillin 0.02 mg/ml
+1.4
-0.5
+0.1
+0.1
-0.5
stress
Lactate-nitrate; anaerobic; copper stress sample3
-0.4
+0.2
+0.0
+0.8
+0.4
stress
Cephalothin 0.04 mg/ml
-0.4
+0.4
+0.6
+0.4
+0.1
stress
A22 0.002 mg/ml
+1.1
+0.4
-0.3
+0.2
-0.1
stress
Phosphomycin 0.012 mg/ml
+0.6
-0.4
+0.7
+0.1
+0.2
stress
Gentamicin 0.0016 mg/ml
+0.7
+0.3
+0.4
+0.3
-0.2
stress
Chlorate 75 mM
+1.6
-0.2
+0.1
+0.1
-0.1
metal limitation
Lactate-nitrite with YE; anaerobic; with copper; sample1
+0.9
-0.1
+0.2
+0.4
+0.2
stress
Lactate-nitrate; anaerobic; copper stress sample2
+1.0
-0.1
+0.3
+0.4
+0.2
stress
Def Vancomycin 0.016 mg/ml
+1.1
+0.8
-0.0
-0.0
-0.1
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample2
+1.1
-0.0
+0.2
+0.3
+0.3
stress
Lactate-nitrate; anaerobic; cadmium stress sample1
+1.0
-0.1
+0.2
+0.5
+0.4
RCH2 grown on a colony of 8R2A
+0.4
+0.4
+0.3
+0.3
+0.5
stress
nitrate 200 mM
+1.0
+0.3
+0.4
+0.2
+0.2
stress
Lactate-nitrate; anaerobic; cobalt stress sample3
+1.5
-0.1
+0.1
+0.4
+0.3
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.8
+0.7
+0.7
+0.6
-0.2
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