Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2048 and Psest_2049 are separated by 359 nucleotidesPsest_2049 and Psest_2050 are separated by 239 nucleotidesPsest_2050 and Psest_2051 are separated by 14 nucleotidesPsest_2051 and Psest_2052 are separated by 117 nucleotides Psest_2048: Psest_2048 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,169,900 to 2,170,559 _2048 Psest_2049: Psest_2049 - Outer membrane receptor proteins, mostly Fe transport, at 2,170,919 to 2,173,219 _2049 Psest_2050: Psest_2050 - Arabinose efflux permease, at 2,173,459 to 2,174,622 _2050 Psest_2051: Psest_2051 - Ribonuclease D, at 2,174,637 to 2,175,791 _2051 Psest_2052: Psest_2052 - PAS domain S-box, at 2,175,909 to 2,177,225 _2052
Group Condition Psest_2048 Psest_2049 Psest_2050 Psest_2051 Psest_2052
carbon source Ethanol (C) -2.7 +0.3 +0.1 -0.2 +0.2
carbon source Ethanol (C) -2.9 +0.4 +0.1 -0.1 +0.3
stress Thallium(I) acetate 0.09 mg/ml -1.2 -0.2 +0.1 -0.4 -0.3
RCH2 grown on a colony of N2F3 -0.8 -0.2 -0.4 -0.3 -0.4
RCH2 grown on a colony of Serratia -0.6 +0.2 -0.3 -0.9 -0.4
stress Vancomycin 0.016 mg/ml -0.9 +0.2 -0.4 -0.0 -0.3
stress Def Phosphomycin 0.125 mg/ml -0.4 +0.3 -1.5 +0.2 -0.0
RCH2 grown on a colony of N2F3 -1.4 -0.1 +0.5 -0.3 +0.3
stress Doxycycline hyclate 0.0002 mg/ml -0.9 +0.1 +0.3 -0.3 -0.1
stress Paraquat dichloride 0.015 mg/ml -0.5 -0.2 -0.8 -0.1 +0.6
RCH2 grown on a colony of N2C3 -0.7 +0.5 -0.0 -0.3 +0.3
RCH2 grown on a colony of Serratia +1.0 -0.3 -0.4 -0.2 +0.4
stress Thallium(I) acetate 0.1 mg/ml +0.7 -0.3 +0.4 -0.4 +0.2
stress Phosphomycin 0.012 mg/ml -0.3 -0.5 +1.1 +0.3 +0.0
stress Def Carbenicillin 0.02 mg/ml +1.4 -0.5 +0.1 +0.1 -0.5
stress Lactate-nitrate; anaerobic; copper stress sample3 -0.4 +0.2 +0.0 +0.8 +0.4
stress Cephalothin 0.04 mg/ml -0.4 +0.4 +0.6 +0.4 +0.1
stress A22 0.002 mg/ml +1.1 +0.4 -0.3 +0.2 -0.1
stress Phosphomycin 0.012 mg/ml +0.6 -0.4 +0.7 +0.1 +0.2
stress Gentamicin 0.0016 mg/ml +0.7 +0.3 +0.4 +0.3 -0.2
stress Chlorate 75 mM +1.6 -0.2 +0.1 +0.1 -0.1
metal limitation Lactate-nitrite with YE; anaerobic; with copper; sample1 +0.9 -0.1 +0.2 +0.4 +0.2
stress Lactate-nitrate; anaerobic; copper stress sample2 +1.0 -0.1 +0.3 +0.4 +0.2
stress Def Vancomycin 0.016 mg/ml +1.1 +0.8 -0.0 -0.0 -0.1
stress Lactate-nitrate; anaerobic; uranyl acetate stress sample2 +1.1 -0.0 +0.2 +0.3 +0.3
stress Lactate-nitrate; anaerobic; cadmium stress sample1 +1.0 -0.1 +0.2 +0.5 +0.4
RCH2 grown on a colony of 8R2A +0.4 +0.4 +0.3 +0.3 +0.5
stress nitrate 200 mM +1.0 +0.3 +0.4 +0.2 +0.2
stress Lactate-nitrate; anaerobic; cobalt stress sample3 +1.5 -0.1 +0.1 +0.4 +0.3
stress Def Benzalkonium Chloride 0.002 mg/ml +0.8 +0.7 +0.7 +0.6 -0.2
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