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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2044 and Psest_2045 are separated by 138 nucleotides
Psest_2045 and Psest_2046 are separated by 381 nucleotides
Psest_2046 and Psest_2047 are separated by 44 nucleotides
Psest_2047 and Psest_2048 overlap by 4 nucleotides
Psest_2044: Psest_2044 - ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system, at 2,164,274 to 2,165,461
_2044
Psest_2045: Psest_2045 - Methyl-accepting chemotaxis protein, at 2,165,600 to 2,167,774
_2045
Psest_2046: Psest_2046 - hypothetical protein, at 2,168,156 to 2,168,593
_2046
Psest_2047: Psest_2047 - Signal transduction histidine kinase, at 2,168,638 to 2,169,903
_2047
Psest_2048: Psest_2048 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,169,900 to 2,170,559
_2048
Group
Condition
Psest
_2044
Psest
_2045
Psest
_2046
Psest
_2047
Psest
_2048
carbon source
Ethanol (C)
-2.5
-0.0
-1.5
-2.2
-2.9
carbon source
Ethanol (C)
-2.2
-0.1
-1.0
-2.9
-2.7
stress
Def Chloride 400 mM
-1.0
-0.6
-0.9
-0.9
-0.3
stress
Benzalkonium Chloride 0.002 mg/ml
-0.9
-0.4
-0.9
-0.7
-0.7
stress
syringaldehyde 3 mM
-1.0
-0.4
-0.2
-0.8
-0.4
nitrogen source
L-Citrulline (N)
-0.6
-0.1
-0.4
-1.5
+0.1
stress
nitrate 250 mM
-0.6
-0.1
-1.2
+0.4
-0.7
stress
Benzethonium chloride 0.0125 mM
-0.5
-0.2
-0.8
+0.2
-0.7
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-0.3
-0.1
-1.3
+0.5
-0.6
nitrogen source
L-Isoleucine (N)
-0.7
-0.3
+0.4
-1.0
-0.1
stress
Nalidixic 0.00390625 mg/ml
+0.2
+0.1
+0.2
-1.6
-0.5
stress
syringaldehyde 3 mM
-0.7
-0.1
+0.6
-0.4
-1.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.3
-0.3
+0.9
-1.2
-0.7
stress
Vanillin 2 mM
-0.6
-0.0
+0.9
-0.7
-0.9
RCH2 grown on a colony of N2A2
+0.5
-0.1
-0.9
-0.9
+0.3
stress
Chlorate 75 mM
-1.0
-0.3
-0.7
-0.5
+1.6
stress
Thallium(I) acetate 0.09 mg/ml
+0.0
+0.3
+0.8
-0.5
-1.2
carbon source
D-Glucose (C)
+0.7
-0.1
+0.4
-0.6
-0.8
RCH2 grown on a colony of Serratia
-0.4
+0.1
-0.4
-0.6
+1.0
RCH2 grown on a colony of N2F3
+0.6
+0.1
+0.5
-0.7
-0.8
RCH2 grown on a colony of N2A2
+1.1
-0.4
-1.0
+0.6
-0.1
stress
A22 0.002 mg/ml
+0.6
+0.4
-0.5
-0.5
+0.4
stress
Lomefloxacin 0.0001 mM
+0.8
+0.4
-0.9
+1.0
-0.6
RCH2 grown on a colony of 8R2A
+1.1
+0.4
-0.0
-1.2
+0.4
stress
A22 0.002 mg/ml
-0.3
+0.2
-0.4
+0.4
+1.1
stress
2-Furfuraldehyde 0.05 vol%
+0.9
+0.2
+0.6
-0.7
+0.7
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample2
+0.2
+0.1
+0.7
+0.4
+1.1
stress
Def Vancomycin 0.016 mg/ml
-0.1
+0.1
+0.5
+1.2
+1.1
stress
Nalidixic 0.00390625 mg/ml
-0.5
-0.3
+0.2
+5.0
-0.5
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.6
+0.3
+0.6
+1.6
+0.8
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