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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2038 and Psest_2039 are separated by 52 nucleotides
Psest_2039 and Psest_2040 are separated by 102 nucleotides
Psest_2040 and Psest_2041 overlap by 4 nucleotides
Psest_2041 and Psest_2042 overlap by 4 nucleotides
Psest_2038: Psest_2038 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,159,752 to 2,160,417
_2038
Psest_2039: Psest_2039 - PQQ-dependent catabolism-associated CXXCW motif protein, at 2,160,470 to 2,161,033
_2039
Psest_2040: Psest_2040 - alcohol ABC transporter, permease protein, at 2,161,136 to 2,161,927
_2040
Psest_2041: Psest_2041 - ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system, at 2,161,924 to 2,162,793
_2041
Psest_2042: Psest_2042 - PQQ-dependent catabolism-associated beta-propeller protein, at 2,162,790 to 2,163,761
_2042
Group
Condition
Psest
_2038
Psest
_2039
Psest
_2040
Psest
_2041
Psest
_2042
carbon source
Ethanol (C)
-3.1
-1.4
-2.2
-1.4
-2.2
carbon source
Ethanol (C)
-3.2
-1.3
-2.3
-1.4
-2.1
RCH2 grown on a colony of Serratia
-0.3
-0.3
+0.0
-0.8
-0.4
RCH2 grown on a colony of N2F3
-0.3
-0.1
-0.2
-0.7
-0.3
lb
LB
+0.3
-0.7
-0.2
-0.5
+0.1
stress
sodium fluoride 6.25 mM
-0.6
-0.4
-0.2
+0.3
-0.2
stress
Benzethonium chloride 0.01 mM
-0.1
+0.3
-0.2
-0.7
-0.3
carbon source
propionate (C)
-0.6
-0.1
+0.1
-0.7
+0.5
RCH2 grown on a colony of N2A2
-0.3
-0.6
-0.1
+0.6
-0.1
lb
LB
+0.5
-0.8
+0.2
-0.3
-0.0
stress
Doxycycline hyclate 0.0002 mg/ml
+0.6
-0.0
-0.1
-0.4
-0.4
RCH2 grown on a colony of N2F3
+0.3
-0.4
+0.1
+0.3
-0.5
radiation
Ionizing radiation, 319.06 Gy,
-0.2
-0.4
-0.3
+0.6
+0.1
stress
Cephalothin 0.04 mg/ml
-0.7
+0.4
-0.3
+0.6
+0.1
RCH2 grown on a colony of 8R2A
-0.1
+0.1
-0.6
+1.0
+0.3
RCH2 grown on a colony of Serratia
-0.3
+0.2
-0.4
+0.9
+0.3
stress
Benzethonium chloride 0.01 mM
+0.4
+0.2
+0.3
+0.4
-0.3
anaerobic
nitrate reduction - anaerobic
-0.2
+0.7
+0.1
+0.6
+0.0
stress
Lactate-nitrate; anaerobic; copper stress sample3
+0.2
+0.8
+0.1
+0.6
-0.1
stress
Def Fusidic 0.064 mg/ml
+0.6
-0.1
+0.3
+0.4
+0.3
nitrogen source
nitrite (N)
-0.0
+0.5
+0.1
+0.7
+0.5
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.3
+0.7
+0.2
+0.9
+0.3
stress
Def Vancomycin 0.008 mg/ml
+0.6
+0.3
+0.2
+0.3
+0.4
stress
Def Fusidic 0.032 mg/ml
+0.5
+0.3
+0.3
+0.4
+0.3
stress
Def Doxycycline hyclate 0.0002 mg/ml
+0.4
+0.4
+0.4
+0.5
+0.3
carbon source
L-Proline (C)
+1.3
+0.8
+0.1
-0.0
-0.1
stress
Def Carbenicillin 0.008 mg/ml
+0.1
+1.0
-0.1
+0.9
+0.3
stress
Def Vancomycin 0.016 mg/ml
+1.2
+0.3
+0.3
+0.2
+0.4
stress
Def Nalidixic 0.001 mg/ml
+1.4
+0.9
+0.1
+0.3
+0.0
stress
Def Benzalkonium Chloride 0.002 mg/ml
+2.9
+2.2
+1.0
+0.7
+1.3
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