Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2038 and Psest_2039 are separated by 52 nucleotidesPsest_2039 and Psest_2040 are separated by 102 nucleotidesPsest_2040 and Psest_2041 overlap by 4 nucleotidesPsest_2041 and Psest_2042 overlap by 4 nucleotides Psest_2038: Psest_2038 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,159,752 to 2,160,417 _2038 Psest_2039: Psest_2039 - PQQ-dependent catabolism-associated CXXCW motif protein, at 2,160,470 to 2,161,033 _2039 Psest_2040: Psest_2040 - alcohol ABC transporter, permease protein, at 2,161,136 to 2,161,927 _2040 Psest_2041: Psest_2041 - ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system, at 2,161,924 to 2,162,793 _2041 Psest_2042: Psest_2042 - PQQ-dependent catabolism-associated beta-propeller protein, at 2,162,790 to 2,163,761 _2042
Group Condition Psest_2038 Psest_2039 Psest_2040 Psest_2041 Psest_2042
carbon source Ethanol (C) -3.1 -1.4 -2.2 -1.4 -2.2
carbon source Ethanol (C) -3.2 -1.3 -2.3 -1.4 -2.1
RCH2 grown on a colony of Serratia -0.3 -0.3 +0.0 -0.8 -0.4
RCH2 grown on a colony of N2F3 -0.3 -0.1 -0.2 -0.7 -0.3
lb LB +0.3 -0.7 -0.2 -0.5 +0.1
stress sodium fluoride 6.25 mM -0.6 -0.4 -0.2 +0.3 -0.2
stress Benzethonium chloride 0.01 mM -0.1 +0.3 -0.2 -0.7 -0.3
carbon source propionate (C) -0.6 -0.1 +0.1 -0.7 +0.5
RCH2 grown on a colony of N2A2 -0.3 -0.6 -0.1 +0.6 -0.1
lb LB +0.5 -0.8 +0.2 -0.3 -0.0
stress Doxycycline hyclate 0.0002 mg/ml +0.6 -0.0 -0.1 -0.4 -0.4
RCH2 grown on a colony of N2F3 +0.3 -0.4 +0.1 +0.3 -0.5
radiation Ionizing radiation, 319.06 Gy, -0.2 -0.4 -0.3 +0.6 +0.1
stress Cephalothin 0.04 mg/ml -0.7 +0.4 -0.3 +0.6 +0.1
RCH2 grown on a colony of 8R2A -0.1 +0.1 -0.6 +1.0 +0.3
RCH2 grown on a colony of Serratia -0.3 +0.2 -0.4 +0.9 +0.3
stress Benzethonium chloride 0.01 mM +0.4 +0.2 +0.3 +0.4 -0.3
anaerobic nitrate reduction - anaerobic -0.2 +0.7 +0.1 +0.6 +0.0
stress Lactate-nitrate; anaerobic; copper stress sample3 +0.2 +0.8 +0.1 +0.6 -0.1
stress Def Fusidic 0.064 mg/ml +0.6 -0.1 +0.3 +0.4 +0.3
nitrogen source nitrite (N) -0.0 +0.5 +0.1 +0.7 +0.5
stress Def 2-Furfuraldehyde 0.032 vol% -0.3 +0.7 +0.2 +0.9 +0.3
stress Def Vancomycin 0.008 mg/ml +0.6 +0.3 +0.2 +0.3 +0.4
stress Def Fusidic 0.032 mg/ml +0.5 +0.3 +0.3 +0.4 +0.3
stress Def Doxycycline hyclate 0.0002 mg/ml +0.4 +0.4 +0.4 +0.5 +0.3
carbon source L-Proline (C) +1.3 +0.8 +0.1 -0.0 -0.1
stress Def Carbenicillin 0.008 mg/ml +0.1 +1.0 -0.1 +0.9 +0.3
stress Def Vancomycin 0.016 mg/ml +1.2 +0.3 +0.3 +0.2 +0.4
stress Def Nalidixic 0.001 mg/ml +1.4 +0.9 +0.1 +0.3 +0.0
stress Def Benzalkonium Chloride 0.002 mg/ml +2.9 +2.2 +1.0 +0.7 +1.3
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