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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0198 and Psest_0199 are separated by 598 nucleotides
Psest_0199 and Psest_0200 are separated by 281 nucleotides
Psest_0200 and Psest_0201 are separated by 120 nucleotides
Psest_0201 and Psest_0202 are separated by 131 nucleotides
Psest_0198: Psest_0198 - TRAP transporter solute receptor, TAXI family, at 195,463 to 196,428
_0198
Psest_0199: Psest_0199 - PAS domain S-box, at 197,027 to 198,613
_0199
Psest_0200: Psest_0200 - hypothetical protein, at 198,895 to 199,059
_0200
Psest_0201: Psest_0201 - PAS domain S-box, at 199,180 to 200,760
_0201
Psest_0202: Psest_0202 - diguanylate cyclase (GGDEF) domain, at 200,892 to 202,823
_0202
Group
Condition
Psest
_0198
Psest
_0199
Psest
_0200
Psest
_0201
Psest
_0202
stress
Furfuryl Alcohol 0.05 vol%
-0.7
-0.6
N.D.
-1.2
-0.0
carbon source
L-Proline (C)
-1.5
+0.2
N.D.
-0.6
-0.3
nitrogen source
L-Alanine (N)
-0.6
-0.4
N.D.
-1.0
+0.0
nitrogen source
L-Glutamic (N)
-1.7
-0.1
N.D.
-0.1
-0.0
stress
Def Phosphomycin 0.125 mg/ml
-0.3
-0.2
N.D.
-1.0
-0.4
carbon source
L-Proline (C)
-1.4
+0.1
N.D.
-0.2
-0.3
stress
Def Carbenicillin 0.008 mg/ml
+0.4
+0.1
N.D.
-0.8
-1.0
nitrogen source
L-Glutamic (N)
-1.5
+0.3
N.D.
+0.2
+0.1
nitrogen source
nitrite (N)
+0.9
+0.2
N.D.
+0.2
-0.8
RCH2 grown on a colony of N2C3
+0.1
+0.8
N.D.
-0.7
+0.4
stress
Paraquat dichloride 0.015 mg/ml
+0.9
-0.5
N.D.
+0.4
+0.2
carbon source
RCH2 defined media
+0.5
+0.7
N.D.
+0.3
-0.4
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.1
+0.9
N.D.
+0.7
-0.2
stress
Gentamicin 0.0016 mg/ml
+0.5
+0.5
N.D.
+0.7
-0.3
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.6
+0.4
N.D.
+0.7
-0.3
stress
nitrate 250 mM
+0.3
+0.9
N.D.
+0.6
-0.4
carbon source
butyrate (C)
+0.7
+0.6
N.D.
+0.5
-0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.6
+0.5
N.D.
-0.1
+0.7
stress
Def Nalidixic 0.001 mg/ml
+0.7
+0.3
N.D.
+0.8
-0.1
stress
Phosphomycin 0.012 mg/ml
+2.0
+0.0
N.D.
-0.2
-0.1
stress
Def Thallium(I) acetate 0.125 mg/ml
+0.7
+0.1
N.D.
+0.8
+0.3
stress
Chlorate 75 mM
-0.3
+0.7
N.D.
+1.3
+0.2
stress
Def Chloride 400 mM
+0.7
+0.4
N.D.
+0.8
+0.1
stress
Def Benzethonium chloride 0.008 mM
+0.7
+1.0
N.D.
+0.5
-0.1
stress
Cephalothin 0.04 mg/ml
+1.4
+0.5
N.D.
+0.5
-0.4
stress
Phosphomycin 0.012 mg/ml
+1.9
-0.1
N.D.
+0.1
+0.3
stress
Benzalkonium Chloride 0.002 mg/ml
+0.8
+0.6
N.D.
+0.4
+0.3
anaerobic
nitrate reduction - anaerobic
+0.7
+0.4
N.D.
+0.9
+0.2
carbon source
L-tyrosine (C)
+1.9
+0.8
N.D.
-0.0
-0.0
carbon source
L-tyrosine (C)
+1.6
+0.7
N.D.
+0.5
+0.1
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