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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_2023 and Psest_2024 are separated by 360 nucleotides
Psest_2024 and Psest_2025 are separated by 61 nucleotides
Psest_2025 and Psest_2026 are separated by 218 nucleotides
Psest_2026 and Psest_2027 are separated by 29 nucleotides
Psest_2023: Psest_2023 - isocitrate dehydrogenase, NADP-dependent, monomeric type, at 2,141,897 to 2,144,125
_2023
Psest_2024: Psest_2024 - isocitrate dehydrogenase, NADP-dependent, prokaryotic type, at 2,144,486 to 2,145,742
_2024
Psest_2025: Psest_2025 - cold shock domain protein CspD, at 2,145,804 to 2,146,064
_2025
Psest_2026: Psest_2026 - Uncharacterized conserved protein, at 2,146,283 to 2,146,645
_2026
Psest_2027: Psest_2027 - ATP-dependent Clp protease ATP-binding subunit clpA, at 2,146,675 to 2,148,945
_2027
Group
Condition
Psest
_2023
Psest
_2024
Psest
_2025
Psest
_2026
Psest
_2027
stress
nitrate 250 mM
-2.4
-0.2
-4.1
-0.5
-0.1
stress
Def Benzethonium chloride 0.008 mM
-0.8
-0.4
-5.9
-0.2
+0.9
stress
syringaldehyde 3 mM
-0.5
-0.3
-4.9
+0.1
+0.0
RCH2 grown on a colony of N2F3
+0.8
+0.1
-5.2
-0.2
-0.6
stress
Benzethonium chloride 0.01 mM
-2.8
+0.1
-2.5
-0.1
+0.2
stress
2-Furfuraldehyde 0.05 vol%
-1.9
-0.2
-2.8
+0.2
-0.0
stress
Cisplatin 0.0016 mg/ml
-2.4
-0.1
-1.7
-0.2
+0.0
RCH2 grown on a colony of N2F3
-1.2
-0.1
-1.2
-0.8
-1.1
stress
perchlorate 25 mM
-0.7
+0.1
-3.1
-0.4
-0.2
stress
L-Lysine 200 mM
-1.1
-0.2
-2.3
+0.1
-0.6
RCH2 grown on a colony of 8R2A
-2.8
+0.3
-1.4
+0.3
-0.1
stress
Thallium(I) acetate 0.09 mg/ml
+0.4
-0.2
-3.2
-0.3
-0.4
stress
D-Cycloserine 0.032 mg/ml
+0.4
+0.0
-3.7
+0.1
-0.3
stress
Gentamicin 0.0016 mg/ml
-2.3
+0.1
-2.0
+0.0
+0.6
carbon source
butyrate (C)
+0.5
+0.4
-1.6
-0.1
-2.7
stress
Dimethyl Sulfoxide 5 vol%
-0.6
+0.2
-3.2
+0.1
+0.2
stress
Cobalt chloride 0.08 mM
-0.3
+0.4
-3.2
+0.2
-0.2
carbon source
propionate (C)
+0.4
-0.6
-1.7
-0.9
+0.7
stress
Bacitracin 0.25 mg/ml
+1.9
-0.2
-3.6
+0.2
+0.3
stress
Benzalkonium Chloride 0.002 mg/ml
-0.1
+0.2
-3.0
+0.7
+0.9
stress
Spectinomycin 0.00625 mg/ml
-2.4
+0.0
+1.2
-0.4
+0.4
nitrogen source
L-Isoleucine (N)
-0.6
-0.1
+1.8
-0.2
-1.9
carbon source
butyrate (C)
+1.0
+0.7
-0.2
+0.1
-2.5
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.4
-0.0
-4.2
+2.2
+2.4
stress
Fusidic 0.016 mg/ml
+0.4
+0.4
-2.6
+1.3
+1.6
stress
Choline chloride 90 mM
-1.9
-0.1
+3.2
+0.4
+0.2
carbon source
L-tyrosine (C)
+3.4
+0.2
+1.2
-0.2
-1.1
carbon source
butyrate (C)
+0.9
+0.9
+1.1
+1.8
-1.1
carbon source
L-tyrosine (C)
+2.6
+0.4
+1.4
+0.2
-0.8
stress
Paraquat dichloride 0.015 mg/ml
+2.8
+0.2
+1.1
-0.1
+0.2
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