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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_2010 and Psest_2011 are separated by 218 nucleotides
Psest_2011 and Psest_2012 are separated by 123 nucleotides
Psest_2012 and Psest_2013 are separated by 16 nucleotides
Psest_2013 and Psest_2014 are separated by 191 nucleotides
Psest_2010: Psest_2010 - queuosine biosynthesis protein QueD, at 2,127,554 to 2,127,925
_2010
Psest_2011: Psest_2011 - Predicted permease, at 2,128,144 to 2,129,460
_2011
Psest_2012: Psest_2012 - Predicted permease, at 2,129,584 to 2,130,678
_2012
Psest_2013: Psest_2013 - Predicted phosphatase, at 2,130,695 to 2,132,689
_2013
Psest_2014: Psest_2014 - Isocitrate lyase (EC 4.1.3.1)
(from data)
, at 2,132,881 to 2,134,476
_2014
Group
Condition
Psest
_2010
Psest
_2011
Psest
_2012
Psest
_2013
Psest
_2014
stress
Nickel (II) chloride 0.8 mM
N.D.
-5.9
-0.6
-0.2
-0.2
stress
Paraquat dichloride 0.015 mg/ml
N.D.
-5.0
-0.4
-0.1
-0.1
carbon source
acetate (C)
N.D.
-0.2
+0.2
-0.1
-5.3
carbon source
L-Leucine (C)
N.D.
-0.1
+0.1
-0.0
-5.4
carbon source
L-Leucine (C)
N.D.
+0.0
+0.3
+0.1
-5.8
stress
Paraquat dichloride 0.015 mg/ml
N.D.
-5.0
-0.2
-0.0
-0.1
stress
nitrite 2.5 mM
N.D.
-5.3
-0.0
+0.1
-0.1
stress
D-Cycloserine 0.032 mg/ml
N.D.
-5.2
+0.2
-0.3
+0.1
stress
Furfuryl Alcohol 0.05 vol%
N.D.
-5.2
+0.2
+0.0
-0.2
stress
D-Cycloserine 0.032 mg/ml
N.D.
-5.2
+0.2
-0.0
-0.0
stress
nitrite 2.5 mM
N.D.
-5.2
+0.1
-0.2
+0.1
stress
nitrite 2.5 mM
N.D.
-5.7
+0.2
+0.0
+0.4
stress
Nickel (II) chloride 1 mM
N.D.
-3.5
-0.6
-0.5
-0.2
carbon source
Tween 20 (C)
N.D.
+0.1
+0.2
+0.1
-5.1
carbon source
butyrate (C)
N.D.
-0.1
+0.1
-0.0
-4.6
stress
Nickel (II) chloride 1 mM
N.D.
-3.8
-0.3
-0.4
-0.1
carbon source
acetate (C)
N.D.
+0.1
-0.2
+0.0
-4.4
stress
Cobalt chloride 0.06 mM
N.D.
-3.8
-0.3
+0.0
-0.0
carbon source
Tween 20 (C)
N.D.
+0.2
+0.2
+0.1
-4.4
carbon source
butyrate (C)
N.D.
+0.1
+0.1
-0.0
-4.1
carbon source
butyrate (C)
N.D.
-0.0
-0.0
-0.1
-3.2
stress
methylglyoxal 0.0016 vol%
N.D.
-2.8
-0.4
-0.0
+0.0
carbon source
Ethanol (C)
N.D.
+0.2
-0.0
-0.2
-2.9
stress
Benzalkonium Chloride 0.002 mg/ml
N.D.
-3.7
+0.3
+0.4
+0.2
stress
Nickel (II) chloride 0.9 mM
N.D.
-2.0
-0.4
-0.2
-0.1
carbon source
Ethanol (C)
N.D.
+0.3
+0.2
-0.0
-3.2
stress
sodium fluoride 6.25 mM
N.D.
-2.4
-0.1
-0.0
-0.1
RCH2 grown on a colony of Serratia
N.D.
-0.5
+0.3
-0.1
-1.8
stress
nitrate 250 mM
N.D.
-2.1
+0.2
-0.2
+0.1
stress
Bacitracin 0.25 mg/ml
N.D.
-1.8
+0.3
+0.3
+0.2
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