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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_1997 and Psest_1998 are separated by 17 nucleotides
Psest_1998 and Psest_1999 are separated by 113 nucleotides
Psest_1999 and Psest_2000 are separated by 68 nucleotides
Psest_2000 and Psest_2001 are separated by 80 nucleotides
Psest_1997: Psest_1997 - 6-phosphogluconolactonase, at 2,114,680 to 2,115,393
_1997
Psest_1998: Psest_1998 - Entner-Doudoroff aldolase, at 2,115,411 to 2,116,055
_1998
Psest_1999: Psest_1999 - pseudouridine synthase, at 2,116,169 to 2,117,302
_1999
Psest_2000: Psest_2000 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,117,371 to 2,118,111
_2000
Psest_2001: Psest_2001 - 2-phosphoglycolate phosphatase, prokaryotic, at 2,118,192 to 2,118,863
_2001
Group
Condition
Psest
_1997
Psest
_1998
Psest
_1999
Psest
_2000
Psest
_2001
stress
Chlorate 75 mM
-1.7
-0.2
-1.5
-3.2
-1.6
stress
syringaldehyde 4 mM
-0.7
-0.6
-3.6
-1.2
-0.8
stress
Def Chlorate 40 mM
-0.5
-0.0
-1.3
-4.1
-0.4
stress
Def Chlorate 20 mM
-0.6
+0.2
-1.1
-3.0
-1.3
stress
A22 0.002 mg/ml
-1.6
+0.1
-2.6
+0.3
-1.4
stress
Benzethonium chloride 0.01 mM
-1.5
-0.1
-3.1
-0.1
+0.0
RCH2 grown on a colony of Serratia
-0.5
+0.6
-2.9
-1.0
-0.7
lb
LB
+0.6
-0.6
-3.6
-0.3
-0.1
stress
Thallium(I) acetate 0.09 mg/ml
-0.8
+0.3
-2.0
+0.1
-1.6
stress
Def Cephalothin 0.04 mg/ml
+0.4
+0.3
-1.7
-1.1
-1.8
stress
Furfuryl Alcohol 0.05 vol%
+0.5
+0.4
-4.5
-0.3
+0.1
carbon source
L-Alanine (C)
-0.3
-0.1
-3.5
+0.6
-0.4
anaerobic
Nitrate/ lactate media with Nitrate 250mM
-1.2
+0.2
-2.2
+0.4
-0.9
stress
Chlorite 0.06 mM
+0.4
+0.2
+0.2
-1.1
-3.4
nitrogen source
L-Citrulline (N)
+0.1
+1.2
-4.2
-0.8
+0.6
stress
Choline chloride 90 mM
+1.3
+0.0
-3.6
+0.2
-0.8
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.8
+0.2
-2.5
-0.2
-1.2
stress
Gentamicin 0.0016 mg/ml
-0.6
-0.8
-0.1
+1.7
-2.6
stress
nitrate 200 mM
-0.6
+0.9
-3.1
+0.7
-0.3
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+1.5
-0.5
-2.4
+0.0
-0.8
stress
Vancomycin 0.016 mg/ml
+0.7
+0.6
-3.6
+0.4
+0.1
stress
methylglyoxal 0.0016 vol%
-0.5
+0.5
-4.8
+1.0
+2.0
stress
nitrate 250 mM
-0.1
-1.0
-2.4
+2.2
+0.2
stress
Fusidic 0.016 mg/ml
-0.0
-0.5
-2.3
+2.3
+0.1
carbon source
butyrate (C)
+0.7
-0.1
-0.0
+2.4
-1.6
stress
Choline Lysine 20 mM
+1.5
+0.2
-0.8
+1.7
-0.9
stress
Neomycin 0.004 mg/ml
-0.2
+0.5
+1.8
+1.3
-1.6
stress
Nalidixic 0.00390625 mg/ml
+1.2
-0.2
+1.3
-1.9
+2.2
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.0
+0.3
+2.2
+1.5
-1.0
stress
Nalidixic 0.00390625 mg/ml
-0.6
-0.6
+2.5
+0.2
+2.5
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