Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1991 and Psest_1992 are separated by 46 nucleotidesPsest_1992 and Psest_1993 are separated by 94 nucleotidesPsest_1993 and Psest_1994 are separated by 140 nucleotidesPsest_1994 and Psest_1995 are separated by 300 nucleotides Psest_1991: Psest_1991 - Glutathione S-transferase, at 2,109,202 to 2,109,804 _1991 Psest_1992: Psest_1992 - GTP cyclohydrolase I, at 2,109,851 to 2,110,396 _1992 Psest_1993: Psest_1993 - Uncharacterized protein conserved in bacteria, at 2,110,491 to 2,111,048 _1993 Psest_1994: Psest_1994 - Amidases related to nicotinamidase, at 2,111,189 to 2,111,785 _1994 Psest_1995: Psest_1995 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 2,112,086 to 2,113,009 _1995
Group Condition Psest_1991 Psest_1992 Psest_1993 Psest_1994 Psest_1995
temperature Glucose defined 30C timecourse1 timepoint 3 -0.0 N.D. +0.2 -4.5 +0.0
temperature Glucose defined 30C timecourse1 timepoint 2 -0.1 N.D. +0.1 -4.0 -0.1
RCH2 grown on a colony of ecoli +0.1 N.D. -0.5 -2.2 -1.0
stress 1-ethyl-3-methylimidazolium acetate 40 mM -3.6 N.D. +0.3 +0.2 -0.3
carbon source Anaerobic, Glucose Nitrate sample1 -0.0 N.D. +0.0 -3.3 +0.1
stress 1-ethyl-3-methylimidazolium acetate 40 mM -3.5 N.D. -0.1 +0.6 -0.0
temperature Glucose defined media 37C sample1 -0.0 N.D. +0.0 -2.8 -0.1
nutrient L-tyrosine -0.3 N.D. +0.0 -2.5 -0.0
RCH2 grown on a colony of ecoli +0.2 N.D. -0.1 -1.9 -0.9
carbon source Glucose defined media -0.1 N.D. +0.1 -2.5 -0.1
temperature Glucose defined media 26C sample1 -0.1 N.D. +0.1 -2.7 +0.1
RCH2 grown on a colony of N2A2 +0.1 N.D. -0.7 -1.4 -0.5
RCH2 grown on a colony of Serratia +0.0 N.D. -0.4 -2.1 +0.6
RCH2 grown on a colony of Serratia +0.3 N.D. +0.7 -1.7 +0.3
stress methylglyoxal 0.0016 vol% -0.7 N.D. -0.5 +1.4 -0.4
stress A22 0.002 mg/ml +0.0 N.D. +0.0 +1.8 -1.6
stress nitrate 250 mM -0.1 N.D. -0.1 +2.0 -1.1
stress nitrate 200 mM -0.4 N.D. -0.2 +2.3 -0.8
stress Def Carbenicillin 0.008 mg/ml +0.4 N.D. +0.1 +1.6 -0.9
nitrogen source L-Alanine (N) -0.6 N.D. +0.0 +2.2 -0.4
nitrogen source L-Alanine (N) -0.6 N.D. +0.2 +2.0 -0.3
stress D-Cycloserine 0.032 mg/ml +0.0 N.D. +0.5 +1.8 -0.6
nitrogen source L-Alanine (N) -0.2 N.D. +0.5 +2.0 -0.3
stress Furfuryl Alcohol 0.05 vol% -0.1 N.D. +0.3 +2.2 -0.5
stress Bacitracin 0.25 mg/ml -0.2 N.D. +0.7 +1.8 -0.2
stress nitrite 2.5 mM +0.1 N.D. +0.5 +1.9 -0.3
stress Gentamicin 0.0016 mg/ml +0.4 N.D. +0.2 +2.0 -0.3
stress Paraquat dichloride 0.015 mg/ml -0.6 N.D. +0.4 +2.6 +0.1
carbon source butyrate (C) +1.1 N.D. +0.2 +1.5 -0.3
stress Def Benzalkonium Chloride 0.002 mg/ml +0.4 N.D. +0.5 +3.5 +0.7
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