Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1966 and Psest_1967 are separated by 168 nucleotidesPsest_1967 and Psest_1968 are separated by 230 nucleotidesPsest_1968 and Psest_1969 overlap by 1 nucleotidesPsest_1969 and Psest_1971 are separated by 284 nucleotides Psest_1966: Psest_1966 - Glycine/D-amino acid oxidases (deaminating), at 2,079,899 to 2,081,182 _1966 Psest_1967: Psest_1967 - tRNA_Val_GAC, at 2,081,351 to 2,081,427 _1967 Psest_1968: Psest_1968 - threonyl-tRNA synthetase, at 2,081,658 to 2,083,580 _1968 Psest_1969: Psest_1969 - translation initiation factor IF-3, at 2,083,580 to 2,084,131 _1969 Psest_1971: Psest_1971 - ribosomal protein L20, at 2,084,416 to 2,084,772 _1971
Group Condition Psest_1966 Psest_1967 Psest_1968 Psest_1969 Psest_1971
stress Def Carbenicillin 0.008 mg/ml -0.8 N.D. N.D. N.D. N.D.
nitrogen source Putrescine (N) -0.7 N.D. N.D. N.D. N.D.
stress Def 2-Furfuraldehyde 0.032 vol% -0.6 N.D. N.D. N.D. N.D.
carbon source L-Alanine (C) -0.6 N.D. N.D. N.D. N.D.
stress Furfuryl Alcohol 0.05 vol% -0.5 N.D. N.D. N.D. N.D.
nitrogen source Putrescine (N) -0.5 N.D. N.D. N.D. N.D.
carbon source RCH2 defined media -0.5 N.D. N.D. N.D. N.D.
stress Def Benzalkonium Chloride 0.002 mg/ml -0.5 N.D. N.D. N.D. N.D.
stress Nalidixic 0.00390625 mg/ml -0.4 N.D. N.D. N.D. N.D.
stress nitrate 250 mM -0.4 N.D. N.D. N.D. N.D.
stress Def Benzethonium chloride 0.008 mM -0.4 N.D. N.D. N.D. N.D.
stress Choline Lysine 20 mM -0.4 N.D. N.D. N.D. N.D.
stress Lactate-nitrate; anaerobic; copper stress sample2 -0.4 N.D. N.D. N.D. N.D.
stress Lactate-nitrate; anaerobic; uranyl acetate stress sample2 -0.4 N.D. N.D. N.D. N.D.
stress Lactate-nitrate; anaerobic; cobalt stress sample1 -0.4 N.D. N.D. N.D. N.D.
carbon source L-Alanine (C) -0.4 N.D. N.D. N.D. N.D.
stress D-Cycloserine 0.032 mg/ml -0.4 N.D. N.D. N.D. N.D.
stress Lactate-nitrate; anaerobic; nickel stress sample1 -0.3 N.D. N.D. N.D. N.D.
stress Chlorate 75 mM -0.3 N.D. N.D. N.D. N.D.
metal limitation Lactate-nitrite; anaerobic; sample1 -0.3 N.D. N.D. N.D. N.D.
nitrogen source Putrescine (N) -0.3 N.D. N.D. N.D. N.D.
stress Def methylglyoxal 0.01 vol% -0.3 N.D. N.D. N.D. N.D.
metal limitation Lactate; aerobic; with copper, sample3 -0.3 N.D. N.D. N.D. N.D.
metal limitation Lactate-nitrite with YE; anaerobic; sample2 -0.3 N.D. N.D. N.D. N.D.
stress Def Lomefloxacin 0.00004 mM -0.3 N.D. N.D. N.D. N.D.
temperature LB 30C timecourse1 timepoint 3 -0.3 N.D. N.D. N.D. N.D.
carbon source L-Lactate (C) -0.3 N.D. N.D. N.D. N.D.
carbon source propionate (C) +0.4 N.D. N.D. N.D. N.D.
nitrogen source L-Glutamic (N) +0.4 N.D. N.D. N.D. N.D.
RCH2 grown on a colony of Serratia +0.7 N.D. N.D. N.D. N.D.
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