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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_0017 and Psest_0018 overlap by 4 nucleotides
Psest_0018 and Psest_0019 are separated by 120 nucleotides
Psest_0019 and Psest_0020 are separated by 330 nucleotides
Psest_0020 and Psest_0021 are separated by 74 nucleotides
Psest_0017: Psest_0017 - ectoine/hydroxyectoine ABC transporter, permease protein EhuD, at 17,631 to 18,290
_0017
Psest_0018: Psest_0018 - ectoine/hydroxyectoine ABC transporter, permease protein EhuC, at 18,287 to 18,946
_0018
Psest_0019: Psest_0019 - ectoine/hydroxyectoine ABC transporter solute-binding protein, at 19,067 to 19,924
_0019
Psest_0020: Psest_0020 - K+ transport systems, NAD-binding component, at 20,255 to 21,628
_0020
Psest_0021: Psest_0021 - ribosomal RNA small subunit methyltransferase RsmB, at 21,703 to 23,025
_0021
Group
Condition
Psest
_0017
Psest
_0018
Psest
_0019
Psest
_0020
Psest
_0021
stress
D-Cycloserine 0.032 mg/ml
+0.2
+0.0
+0.1
-3.6
-0.1
stress
Gentamicin 0.0016 mg/ml
-0.2
+0.4
+0.2
-2.9
-0.6
stress
Carbenicillin 0.008 mg/ml
-0.1
-0.0
+0.0
-2.3
-0.6
lb
LB
+0.0
-0.1
-0.0
-1.6
-1.0
stress
Spectinomycin 0.00625 mg/ml
+0.0
-0.0
+0.1
-3.0
+0.4
stress
Spectinomycin 0.00625 mg/ml
-0.3
-0.4
+0.4
-2.5
+0.4
stress
Fusidic 0.016 mg/ml
-0.3
+0.5
-0.1
-0.6
-2.1
temperature
LB 30C timecourse1 timepoint 3
-0.2
+0.0
-0.2
-1.5
-0.6
stress
benzoic 0.4 mg/ml
-0.1
+0.1
+0.3
-1.8
-0.8
stress
Fusidic 0.016 mg/ml
+0.1
-0.0
+0.1
-1.0
-1.4
stress
D-Cycloserine 0.032 mg/ml
+0.2
-0.0
-0.2
-2.7
+0.8
stress
Fusidic 0.016 mg/ml
+0.2
+0.0
+0.1
-1.5
-0.7
stress
nitrite 2.5 mM
+0.2
-0.3
+0.2
-1.6
-0.2
stress
Carbenicillin 0.0065 mg/ml
+0.3
+0.2
-0.3
-0.9
-0.8
stress
benzoic 0.4 mg/ml
+0.1
+0.1
+0.0
-1.8
+0.5
stress
nitrite 2.5 mM
+0.2
+0.1
-0.1
-1.7
+1.0
RCH2 grown on a colony of Serratia
+0.3
-0.0
-0.0
-1.6
+1.2
stress
L-Lysine 200 mM
-0.1
+0.4
-0.0
+2.3
-2.5
stress
Chlorate 75 mM
-0.5
-0.6
-0.1
+1.0
+0.4
stress
nitrate 250 mM
-0.7
+0.5
-0.5
+2.3
-1.1
nitrogen source
Adenine (N)
-0.1
+0.1
+0.0
+1.7
-0.7
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.2
+0.7
-0.0
+1.2
-0.5
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.2
+0.6
+0.1
+1.6
-0.1
stress
sodium fluoride 8.5 mM
-0.1
+0.2
-0.1
+2.4
-0.3
stress
methylglyoxal 0.0016 vol%
+0.0
-0.3
-0.2
+2.6
+0.1
carbon source
L-Proline (C)
-0.0
+0.0
+0.1
+2.1
+0.3
carbon source
L-Proline (C)
+0.1
+0.0
-0.0
+2.0
+0.4
nitrogen source
L-Alanine (N)
-0.0
-0.0
+0.2
+2.8
-0.4
stress
Phosphomycin 0.012 mg/ml
+0.1
-0.1
-0.0
+2.9
+0.0
stress
Phosphomycin 0.012 mg/ml
+0.0
-0.0
+0.4
+2.6
+0.1
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